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    slc25a16 solute carrier family 25 member 16 [ Danio rerio (zebrafish) ]

    Gene ID: 324578, updated on 2-Nov-2024

    Summary

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    Official Symbol
    slc25a16provided by ZNC
    Official Full Name
    solute carrier family 25 member 16provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3299
    See related
    Ensembl:ENSDARG00000057287 AllianceGenome:ZFIN:ZDB-GENE-030131-3299
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56187; zgc:77742; wu:fc33c08
    Summary
    Predicted to enable coenzyme A transmembrane transporter activity. Predicted to be involved in mitochondrial coenzyme A transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Is expressed in several structures, including adaxial cell; alar plate midbrain region; immature eye; intestinal bulb; and optic tectum. Orthologous to human SLC25A16 (solute carrier family 25 member 16). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See slc25a16 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (18178018..18195942, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (18047034..18064950, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 2C Neighboring gene arachidonate 5-lipoxygenase a Neighboring gene tet methylcytosine dioxygenase 1 Neighboring gene uncharacterized LOC110440176 Neighboring gene eukaryotic translation initiation factor 4E family member 1c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. TET2 plays an essential role in erythropoiesis by regulating lineage-specific genes via DNA oxidative demethylation in a zebrafish model. Ge L, et al. Mol Cell Biol, 2014 Mar. PMID 24396069, Free PMC Article
    2. Targeted Gene Expression in Zebrafish Exposed to Chlorpyrifos-Oxon Confirms Phenotype-Specific Mechanisms Leading to Adverse Outcomes. Garcia-Reyero N, et al. Bull Environ Contam Toxicol, 2016 Jun. PMID 27086301, Free PMC Article
    3. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables coenzyme A transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mitochondrial coenzyme A transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in mitochondrial inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 25 member 16
    Names
    solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205549.1 → NP_991112.1  solute carrier family 25 member 16

      See identical proteins and their annotated locations for NP_991112.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045977
      UniProtKB/TrEMBL
      Q7ZV72
      Related
      ENSDARP00000074352.4, ENSDART00000079902.5
      Conserved Domains (2) summary
      PTZ00169
      Location:25 → 319
      PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
      pfam00153
      Location:21 → 113
      Mito_carr; Mitochondrial carrier protein

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      18178018..18195942 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009307225.4 → XP_009305500.1  solute carrier family 25 member 16 isoform X1

      UniProtKB/TrEMBL
      A0A8M3BEK1, B8A698
      Conserved Domains (2) summary
      PTZ00169
      Location:25 → 319
      PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
      pfam00153
      Location:21 → 113
      Mito_carr; Mitochondrial carrier protein

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394875.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      139812..156241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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