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    si:dkey-87o1.2 si:dkey-87o1.2 [ Danio rerio (zebrafish) ]

    Gene ID: 796684, updated on 12-Sep-2024

    Summary

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    Official Symbol
    si:dkey-87o1.2provided by ZNC
    Official Full Name
    si:dkey-87o1.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110411-217
    See related
    Ensembl:ENSDARG00000095796 AllianceGenome:ZFIN:ZDB-GENE-110411-217
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See si:dkey-87o1.2 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (17713480..17719700)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (17807950..17812996)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene si:dkey-17m8.1 Neighboring gene transmembrane protein 238b Neighboring gene uncharacterized LOC137487838 Neighboring gene zgc:174935 Neighboring gene microRNA 190b Neighboring gene thioesterase superfamily member 4 Neighboring gene RAR-related orphan receptor C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. Cheung CT, et al. BMC Genomics, 2019 Jul 15. PMID 31307377, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC796684

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326612.1 → NP_001313541.1  uncharacterized protein LOC796684 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). This encoded isoform (1) lacks a predicted signal peptide compared to isoform 2.
      Source sequence(s)
      CR361564, EH475885, EH538422
      UniProtKB/TrEMBL
      A0A8M1P854, F8W378
      Related
      ENSDARP00000124470.1, ENSDART00000149042.3
      Conserved Domains (1) summary
      cl01868
      Location:66 → 144
      YukC; WXG100 protein secretion system (Wss), protein YukC

    2. NM_001326613.1 → NP_001313542.1  uncharacterized protein LOC796684 isoform 2 precursor

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start site compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
      Source sequence(s)
      CR361564, EH475885, EH539705
      UniProtKB/TrEMBL
      A0A8M1P3J3, F8W4X3
      Related
      ENSDARP00000123855.1, ENSDART00000149437.3
      Conserved Domains (1) summary
      cl01868
      Location:41 → 119
      YukC; WXG100 protein secretion system (Wss), protein YukC

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      17713480..17719700
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214027.1 → XP_068070128.1  uncharacterized protein LOC796684 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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