lsm14b LSM family member 14B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lsm14bprovided by ZNC
Official Full Name: LSM family member 14Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-779
See related: Ensembl:ENSDARG00000025386 AllianceGenome:ZFIN:ZDB-GENE-040426-779
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:55673
Summary: Predicted to enable mRNA binding activity. Located in cytoplasm. Is expressed in kidney; liver; oocyte stage I; oocyte stage II; and ovary. Orthologous to human LSM14B (LSM family member 14B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (553396..567183)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (540603..554390)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

zRAP55 might function in the control of protein translation at the early stages of oogenesis in zebrafish.
Title: Identification of zRAP55,a gene preponderantly expressed in Stages I and II oocytes of zebrafish.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables mRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: protein LSM14 homolog B

Names: LSM14B, SCD6 homolog B; zRAP55

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200171.2 → NP_956465.2 protein LSM14 homolog B

Status: VALIDATED

Source sequence(s)

BC153496, BX323461, EH490318

UniProtKB/TrEMBL

A0A8M1PE55, A8E580, F1Q898

Related

ENSDARP00000033806.5, ENSDART00000034707.6

Conserved Domains (2) summary

pfam09532
Location:245 → 346

FDF; FDF domain

pfam12701
Location:6 → 80

LSM14; Scd6-like Sm domain