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    apool apolipoprotein O-like [ Danio rerio (zebrafish) ]

    Gene ID: 541537, updated on 2-Nov-2024

    Summary

    Official Symbol
    apoolprovided by ZNC
    Official Full Name
    apolipoprotein O-likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050327-76
    See related
    Ensembl:ENSDARG00000039374 AllianceGenome:ZFIN:ZDB-GENE-050327-76
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc21c08; im:7144020; wu:fc21c08; zgc:110800
    Summary
    Predicted to be involved in cristae formation. Predicted to be located in mitochondrial inner membrane. Predicted to be part of MICOS complex. Orthologous to human APOOL (apolipoprotein O like). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See apool in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (22851859..22868636, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (22348059..22364836, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490109 Neighboring gene neuronal PAS domain protein 2 Neighboring gene si:ch211-26b3.4 Neighboring gene RPA1 related single stranded DNA binding protein Neighboring gene si:dkey-237j10.2 Neighboring gene high mobility group nucleosomal binding domain 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in cristae formation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within cristae formation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of MICOS complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of MICOS complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    MICOS complex subunit MIC27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014351.1NP_001014373.1  MICOS complex subunit MIC27

      See identical proteins and their annotated locations for NP_001014373.1

      Status: PROVISIONAL

      Source sequence(s)
      BC091888
      UniProtKB/TrEMBL
      Q58EI3
      Related
      ENSDARP00000057540.6, ENSDART00000057541.7
      Conserved Domains (1) summary
      pfam09769
      Location:42167
      ApoO; Apolipoprotein O

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      22851859..22868636 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394574.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      88251..100696 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)