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    crybg1a crystallin beta-gamma domain containing 1a [ Danio rerio (zebrafish) ]

    Gene ID: 556848, updated on 2-Nov-2024

    Summary

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    Official Symbol
    crybg1aprovided by ZNC
    Official Full Name
    crystallin beta-gamma domain containing 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041008-100
    See related
    Ensembl:ENSDARG00000031782 AllianceGenome:ZFIN:ZDB-GENE-041008-100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    aim1a; im:7137367; si:ch73-374a13.2
    Summary
    Orthologous to human CRYBG1 (crystallin beta-gamma domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See crybg1a in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (25481571..25550243)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (25463133..25531791)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene serine/arginine repetitive matrix 1 Neighboring gene chloride intracellular channel 4 Neighboring gene reticulon 4 interacting protein 1 Neighboring gene si:ch211-214p16.1 Neighboring gene glutaminyl-tRNA amidotransferase subunit QRSL1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Lens defects in Astyanax mexicanus Cavefish: evolution of crystallins and a role for alphaA-crystallin. Hinaux H, et al. Dev Neurobiol, 2015 May. PMID 25348293
    2. Single cell transcriptomics of the developing zebrafish lens and identification of putative controllers of lens development. Farnsworth DR, et al. Exp Eye Res, 2021 May. PMID 33705730, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    absent in melanoma 1 protein; beta/gamma crystallin domain-containing protein 1
    Names
    absent in melanoma 1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      25481571..25550243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_679769.10 → XP_684861.3  beta/gamma crystallin domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8N7TD83, F1QAH5
      Related
      ENSDARP00000115118.2, ENSDART00000139451.4
      Conserved Domains (4) summary
      pfam09528
      Location:236 → 765
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      cd00161
      Location:2743 → 2839
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
      pfam00030
      Location:2340 → 2434
      Crystall; Beta/Gamma crystallin
      pfam00652
      Location:2711 → 2838
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_005158549.5 → XP_005158606.1  beta/gamma crystallin domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M2B5F6, F1QE29
      Related
      ENSDARP00000041720.5, ENSDART00000041721.6
      Conserved Domains (4) summary
      pfam09528
      Location:87 → 616
      Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
      cd00161
      Location:2594 → 2690
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
      pfam00030
      Location:2191 → 2285
      Crystall; Beta/Gamma crystallin
      pfam00652
      Location:2562 → 2689
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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