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    SPOM_SPCC965.14C cytosine deaminase [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539595, updated on 22-Jun-2024

    Summary

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    Gene symbol
    SPOM_SPCC965.14C
    Gene description
    cytosine deaminase
    Locus tag
    SPOM_SPCC965.14C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Old locus tag
    SPCC965.14c
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    Genomic context

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    See SPOM_SPCC965.14C in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (2314792..2315434)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pyridoxal family membrane transporter Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Fe/ascorbate oxidoreductase family protein Neighboring gene transcription factor TFIID complex subunit Taf13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables 5-fluorocytosine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cytosine deaminase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables zinc ion binding ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in UMP salvage IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cytosine metabolic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    cytosine deaminase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      2314792..2315434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023513.3 → NP_588524.1  cytosine deaminase [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588524.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O59834
      Conserved Domains (1) summary
      COG0590
      Location:3 → 159
      TadA; tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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