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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_015895.1 RefSeqGene
- Range
-
5134..68955
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_739
mRNA and Protein(s)
-
NM_001159699.2 → NP_001153171.1 four and a half LIM domains protein 1 isoform 5
See identical proteins and their annotated locations for NP_001153171.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR, 3' UTR, and 3' coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded protein (isoform 5) has distinct N- and C-termini and is shorter than isoform 1.
- Source sequence(s)
-
BC088369, BM995585, DC373386
- Consensus CDS
-
CCDS55506.1
- UniProtKB/TrEMBL
-
Q53FI7
- Related
- ENSP00000359717.1, ENST00000370683.6
- Conserved Domains (5) summary
-
- cd09344
Location:56 → 109
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:233 → 296
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:117 → 174
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:178 → 230
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:21 → 49
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001159700.2 → NP_001153172.1 four and a half LIM domains protein 1 isoform 2
See identical proteins and their annotated locations for NP_001153172.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, 3' UTR, and 3' coding region compared to variant 1. The encoded protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1. Variants 2, 3, 4 and 9 encode the same protein (isoform 2).
- Source sequence(s)
-
AK304680, AL078638, BC088369, BM995585, DC363191
- Consensus CDS
-
CCDS14655.1
- UniProtKB/TrEMBL
-
Q53FI7
- Related
- ENSP00000485897.1, ENST00000630084.2
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001159701.2 → NP_001153173.1 four and a half LIM domains protein 1 isoform 3 precursor
See identical proteins and their annotated locations for NP_001153173.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, 3' UTR, and coding region and initiates translation at an alternate start codon, compared to variant 1. The encoded protein (isoform 3) is shorter and has distinct N- and C-termini, compared to isoform 1.
- Source sequence(s)
-
AK301642, BC010998, BM995585
- Consensus CDS
-
CCDS55505.1
- UniProtKB/TrEMBL
-
Q53FI7
- Related
- ENSP00000437673.1, ENST00000539015.5
- Conserved Domains (5) summary
-
- cd09344
Location:69 → 122
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:246 → 309
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:130 → 187
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:191 → 243
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:34 → 62
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001159702.3 → NP_001153174.1 four and a half LIM domains protein 1 isoform 1
See identical proteins and their annotated locations for NP_001153174.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest protein (isoform 1).
- Source sequence(s)
-
AF063002, AF098518, BC010998, BM995585
- Consensus CDS
-
CCDS55507.1
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
- Related
- ENSP00000377710.2, ENST00000394155.8
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001159703.2 → NP_001153175.1 four and a half LIM domains protein 1 isoform 4
See identical proteins and their annotated locations for NP_001153175.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and coding region, compared to variant 1. The encoded protein (isoform 4) is shorter than isoform 1.
- Source sequence(s)
-
AF220153, AK301642, AL078638, BC010998, BE965488, BM995585, DA497183
- Consensus CDS
-
CCDS76036.1
- UniProtKB/TrEMBL
-
A0A0D9SFZ9
- Related
- ENSP00000477609.1, ENST00000618438.4
- Conserved Domains (3) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001159704.1 → NP_001153176.1 four and a half LIM domains protein 1 isoform 2
See identical proteins and their annotated locations for NP_001153176.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, 3' UTR, and 3' coding region compared to variant 1. The encoded protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1. Variants 2, 3, 4 and 9 encode the same protein (isoform 2).
- Source sequence(s)
-
AK122708, AL078638, BM995585
- Consensus CDS
-
CCDS14655.1
- UniProtKB/TrEMBL
-
Q53FI7
- Related
- ENSP00000443333.1, ENST00000543669.5
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001167819.1 → NP_001161291.1 four and a half LIM domains protein 1 isoform 2
See identical proteins and their annotated locations for NP_001161291.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) uses a different segment for its 5' UTR and lacks an alternate exon in the 3' coding region, compared to variant 1. The encoded protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1. Variants 2, 3, 4 and 9 encode the same protein (isoform 2).
- Source sequence(s)
-
BC010998, BM995585, DA917361, DA982372
- Consensus CDS
-
CCDS14655.1
- UniProtKB/TrEMBL
-
Q53FI7
- Related
- ENSP00000377709.2, ENST00000394153.6
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001330659.2 → NP_001317588.1 four and a half LIM domains protein 1 isoform 6
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) uses an alternate 5'-terminal exon, lacks two in-frame exons in the 3' coding region, and uses an alternate start codon, compared to variant 1. The encoded isoform (6) is shorter and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AL078638
- Consensus CDS
-
CCDS83493.1
- UniProtKB/TrEMBL
- A0A0D9SFZ9, Q5JXI2
- Related
- ENSP00000359710.3, ENST00000370676.7
- Conserved Domains (3) summary
-
- cd09344
Location:56 → 109
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:117 → 174
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:21 → 49
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001369326.1 → NP_001356255.1 four and a half LIM domains protein 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL078638
- Consensus CDS
-
CCDS55507.1
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
- Related
- ENSP00000498684.1, ENST00000651089.1
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001369327.2 → NP_001356256.1 four and a half LIM domains protein 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL078638
- Consensus CDS
-
CCDS55507.1
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001369328.1 → NP_001356257.1 four and a half LIM domains protein 1 isoform 1
Status: REVIEWED
- Source sequence(s)
-
AL078638
- Consensus CDS
-
CCDS55507.1
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001369329.1 → NP_001356258.1 four and a half LIM domains protein 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AL078638
- Consensus CDS
-
CCDS14655.1
- UniProtKB/TrEMBL
-
Q53FI7
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001369330.1 → NP_001356259.1 four and a half LIM domains protein 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AL078638
- Consensus CDS
-
CCDS14655.1
- UniProtKB/TrEMBL
-
Q53FI7
- Related
- ENSP00000444815.1, ENST00000535737.5
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001369331.1 → NP_001356260.1 four and a half LIM domains protein 1 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AL078638
- Consensus CDS
-
CCDS14655.1
- UniProtKB/TrEMBL
-
Q53FI7
- Related
- ENSP00000359708.1, ENST00000370674.3
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
NM_001449.5 → NP_001440.2 four and a half LIM domains protein 1 isoform 2
See identical proteins and their annotated locations for NP_001440.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, 3' UTR, and 3' coding region compared to variant 1. The encoded protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1. Variants 2, 3, 4 and 9 encode the same protein (isoform 2).
- Source sequence(s)
-
BC010998, BM995585
- Consensus CDS
-
CCDS14655.1
- UniProtKB/TrEMBL
-
Q53FI7
- Related
- ENSP00000499016.1, ENST00000651929.2
- Conserved Domains (5) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09348
Location:217 → 280
- LIM4_FHL1; The fourth LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
RNA
-
NR_027621.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) includes an additional exon at the 5' end, compared to variant 1. This variant is represented as non-coding because it contains an upstream ORF that is predicted to interfere with translation of the downstream expected ORF as used in variant 1.
- Source sequence(s)
-
AK289411, AL078638, BC010998, BM995585
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000023.11 Reference GRCh38.p14 Primary Assembly
- Range
-
136146702..136211359
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047441926.1 → XP_047297882.1 four and a half LIM domains protein 1 isoform X2
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
-
XM_047441927.1 → XP_047297883.1 four and a half LIM domains protein 1 isoform X3
- UniProtKB/TrEMBL
-
Q53FI7
-
XM_024452354.2 → XP_024308122.1 four and a half LIM domains protein 1 isoform X2
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_047441925.1 → XP_047297881.1 four and a half LIM domains protein 1 isoform X2
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
-
XM_006724743.3 → XP_006724806.1 four and a half LIM domains protein 1 isoform X1
See identical proteins and their annotated locations for XP_006724806.1
- Conserved Domains (4) summary
-
- cd09344
Location:56 → 109
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:117 → 174
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:178 → 230
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:21 → 49
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
-
XM_006724746.4 → XP_006724809.1 four and a half LIM domains protein 1 isoform X2
See identical proteins and their annotated locations for XP_006724809.1
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
- Conserved Domains (4) summary
-
- cd09344
Location:40 → 93
- LIM1_FHL1; The first LIM domain of Four and a half LIM domains protein 1
- cd09424
Location:101 → 158
- LIM2_FHL1; The second LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cd09429
Location:162 → 214
- LIM3_FHL1; The third LIM domain of Four and a half LIM domains protein 1 (FHL1)
- cl02475
Location:5 → 33
- LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
Alternate T2T-CHM13v2.0
Genomic
-
NC_060947.1 Alternate T2T-CHM13v2.0
- Range
-
134455091..134519750
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054326701.1 → XP_054182676.1 four and a half LIM domains protein 1 isoform X2
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
-
XM_054326702.1 → XP_054182677.1 four and a half LIM domains protein 1 isoform X3
- UniProtKB/TrEMBL
-
Q53FI7
-
XM_054326700.1 → XP_054182675.1 four and a half LIM domains protein 1 isoform X2
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
-
XM_054326699.1 → XP_054182674.1 four and a half LIM domains protein 1 isoform X2
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630
-
XM_054326697.1 → XP_054182672.1 four and a half LIM domains protein 1 isoform X1
-
XM_054326698.1 → XP_054182673.1 four and a half LIM domains protein 1 isoform X2
- UniProtKB/Swiss-Prot
- B7Z5T4, B7Z793, O95212, Q13230, Q13642, Q13645, Q5JXI7, Q5M7Y6, Q6IB30, Q9NZ40, Q9UKZ8, Q9Y630