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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001253849.2 → NP_001240778.1 V-set domain-containing T-cell activation inhibitor 1 isoform 2
See identical proteins and their annotated locations for NP_001240778.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and coding region and uses a downstream start codon compared to variant 1. The resulting protein (isoform 2) is shorter and has a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AI686571, AK303466, AL391476
- Consensus CDS
-
CCDS58019.1
- UniProtKB/Swiss-Prot
-
Q7Z7D3
- Related
- ENSP00000444724.1, ENST00000539893.5
- Conserved Domains (1) summary
-
- cl11960
Location:2 → 44
- Ig; Immunoglobulin domain
-
NM_001253850.2 → NP_001240779.1 V-set domain-containing T-cell activation inhibitor 1 isoform 3
See identical proteins and their annotated locations for NP_001240779.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon compared to variant 1. The resulting protein (isoform 3) is shorter compared to isoform 1.
- Source sequence(s)
-
AI686571, AL391476, DQ103757
- Consensus CDS
-
CCDS58020.1
- UniProtKB/Swiss-Prot
-
Q7Z7D3
- Related
- ENSP00000328168.3, ENST00000328189.7
-
NM_024626.4 → NP_078902.2 V-set domain-containing T-cell activation inhibitor 1 isoform 1 precursor
See identical proteins and their annotated locations for NP_078902.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest protein (isoform 1).
- Source sequence(s)
-
AI686571, AL391476, AY280972, CN259811, DB198367
- Consensus CDS
-
CCDS894.1
- UniProtKB/Swiss-Prot
- Q0GN76, Q45VN0, Q5WPZ3, Q6P097, Q7Z7D3, Q9H6B2
- UniProtKB/TrEMBL
-
Q5T2L0
- Related
- ENSP00000358470.3, ENST00000369458.8
- Conserved Domains (2) summary
-
- smart00410
Location:46 → 144
- IG_like; Immunoglobulin like
- cl11960
Location:49 → 146
- Ig; Immunoglobulin domain
RNA
-
NR_045603.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate splice site in an internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AI686571, AL391476, BC065717
-
NR_045604.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) uses an alternate splice site in an internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AI686571, AK310812, AL391476
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
117143587..117210927 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017002335.3 → XP_016857824.1 V-set domain-containing T-cell activation inhibitor 1 isoform X2
- UniProtKB/TrEMBL
-
Q5T2L0
- Conserved Domains (2) summary
-
- smart00410
Location:51 → 149
- IG_like; Immunoglobulin like
- cl11960
Location:54 → 151
- Ig; Immunoglobulin domain
-
XM_011542143.2 → XP_011540445.2 V-set domain-containing T-cell activation inhibitor 1 isoform X1
- UniProtKB/TrEMBL
-
Q5T2L0
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
117154077..117221391 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054338745.1 → XP_054194720.1 V-set domain-containing T-cell activation inhibitor 1 isoform X2
- UniProtKB/TrEMBL
-
Q5T2L0
-
XM_054338744.1 → XP_054194719.1 V-set domain-containing T-cell activation inhibitor 1 isoform X1
- UniProtKB/TrEMBL
-
Q5T2L0