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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_009234.1 RefSeqGene
- Range
-
5098..208246
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001256856.2 → NP_001243785.1 F-box/WD repeat-containing protein 1A isoform 3
See identical proteins and their annotated locations for NP_001243785.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 3), compared to isoform 1.
- Source sequence(s)
-
AK313417, BC006204, CR749295
- Consensus CDS
-
CCDS73183.1
- UniProtKB/TrEMBL
- B7Z3H4, Q68DS0
- Related
- ENSP00000377088.5, ENST00000393441.8
- Conserved Domains (4) summary
-
- cd00200
Location:277 → 555
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:280 → 315
- 7WD40; WD40 repeat [structural motif]
- pfam12125
Location:113 → 151
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:155 → 202
- F-box-like
-
NM_003939.5 → NP_003930.1 F-box/WD repeat-containing protein 1A isoform 2
See identical proteins and their annotated locations for NP_003930.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
- Source sequence(s)
-
AF129530, AK313417, BC006204, CR749295
- Consensus CDS
-
CCDS7511.1
- UniProtKB/TrEMBL
-
B2R8L3
- Related
- ENSP00000385339.2, ENST00000408038.6
- Conserved Domains (4) summary
-
- cd00200
Location:267 → 545
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:270 → 305
- 7WD40; WD40 repeat [structural motif]
- pfam12125
Location:103 → 141
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:145 → 192
- F-box-like
-
NM_033637.4 → NP_378663.1 F-box/WD repeat-containing protein 1A isoform 1
See identical proteins and their annotated locations for NP_378663.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
BC006204, BC027994, CR749295
- Consensus CDS
-
CCDS7512.1
- UniProtKB/Swiss-Prot
- B5MD49, Q5W141, Q5W142, Q9Y213, Q9Y297
- UniProtKB/TrEMBL
- A0A0S2Z4P6, A0A0S2Z507
- Related
- ENSP00000359206.3, ENST00000370187.8
- Conserved Domains (4) summary
-
- cd00200
Location:303 → 581
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:306 → 341
- 7WD40; WD40 repeat [structural motif]
- pfam12125
Location:139 → 177
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:181 → 228
- F-box-like
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000010.11 Reference GRCh38.p14 Primary Assembly
- Range
-
101354048..101557313
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047425986.1 → XP_047281942.1 F-box/WD repeat-containing protein 1A isoform X7
- UniProtKB/TrEMBL
-
Q68DS0
-
XM_006718054.3 → XP_006718117.1 F-box/WD repeat-containing protein 1A isoform X1
- UniProtKB/TrEMBL
-
A0A0S2Z507
- Conserved Domains (5) summary
-
- COG2319
Location:417 → 713
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:430 → 708
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam12125
Location:266 → 304
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:308 → 355
- F-box-like; F-box-like
- sd00039
Location:433 → 468
- 7WD40; WD40 repeat [structural motif]
-
XM_017016870.2 → XP_016872359.1 F-box/WD repeat-containing protein 1A isoform X2
- UniProtKB/TrEMBL
-
A0A0S2Z507
-
XM_017016874.2 → XP_016872363.1 F-box/WD repeat-containing protein 1A isoform X5
- UniProtKB/TrEMBL
-
B2R8L3
- Conserved Domains (4) summary
-
- cd00200
Location:241 → 519
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:244 → 279
- 7WD40; WD40 repeat [structural motif]
- pfam12125
Location:77 → 115
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:119 → 166
- F-box-like
-
XM_047425987.1 → XP_047281943.1 F-box/WD repeat-containing protein 1A isoform X8
-
XM_017016871.2 → XP_016872360.1 F-box/WD repeat-containing protein 1A isoform X3
- UniProtKB/TrEMBL
-
Q68DS0
- Conserved Domains (4) summary
-
- cd00200
Location:285 → 563
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:288 → 323
- 7WD40; WD40 repeat [structural motif]
- pfam12125
Location:121 → 159
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:163 → 210
- F-box-like
-
XM_047425983.1 → XP_047281939.1 F-box/WD repeat-containing protein 1A isoform X4
- UniProtKB/TrEMBL
-
Q68DS0
-
XM_017016873.3 → XP_016872362.1 F-box/WD repeat-containing protein 1A isoform X3
- UniProtKB/TrEMBL
-
Q68DS0
- Conserved Domains (4) summary
-
- cd00200
Location:285 → 563
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:288 → 323
- 7WD40; WD40 repeat [structural motif]
- pfam12125
Location:121 → 159
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:163 → 210
- F-box-like
-
XM_047425984.1 → XP_047281940.1 F-box/WD repeat-containing protein 1A isoform X4
- UniProtKB/TrEMBL
-
Q68DS0
-
XM_047425985.1 → XP_047281941.1 F-box/WD repeat-containing protein 1A isoform X7
- UniProtKB/TrEMBL
-
Q68DS0
-
XM_024448247.2 → XP_024304015.1 F-box/WD repeat-containing protein 1A isoform X7
- UniProtKB/TrEMBL
-
Q68DS0
- Conserved Domains (4) summary
-
- cd00200
Location:204 → 482
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:207 → 242
- 7WD40; WD40 repeat [structural motif]
- pfam12125
Location:40 → 78
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:82 → 129
- F-box-like
-
XM_011540320.3 → XP_011538622.1 F-box/WD repeat-containing protein 1A isoform X6
- UniProtKB/TrEMBL
-
Q68DS0
- Conserved Domains (5) summary
-
- COG2319
Location:222 → 518
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:235 → 513
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- pfam12125
Location:71 → 109
- Beta-TrCP_D; D domain of beta-TrCP
- pfam12937
Location:113 → 160
- F-box-like; F-box-like
- sd00039
Location:238 → 273
- 7WD40; WD40 repeat [structural motif]
Alternate T2T-CHM13v2.0
Genomic
-
NC_060934.1 Alternate T2T-CHM13v2.0
- Range
-
102238054..102441353
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054367115.1 → XP_054223090.1 F-box/WD repeat-containing protein 1A isoform X8
-
XM_054367108.1 → XP_054223083.1 F-box/WD repeat-containing protein 1A isoform X2
- UniProtKB/TrEMBL
-
A0A0S2Z507
-
XM_054367107.1 → XP_054223082.1 F-box/WD repeat-containing protein 1A isoform X1
- UniProtKB/TrEMBL
-
A0A0S2Z507
-
XM_054367113.1 → XP_054223088.1 F-box/WD repeat-containing protein 1A isoform X5
- UniProtKB/TrEMBL
-
B2R8L3
-
XM_054367109.1 → XP_054223084.1 F-box/WD repeat-containing protein 1A isoform X3
- UniProtKB/TrEMBL
-
Q68DS0
-
XM_054367111.1 → XP_054223086.1 F-box/WD repeat-containing protein 1A isoform X4
- UniProtKB/TrEMBL
-
Q68DS0
-
XM_054367110.1 → XP_054223085.1 F-box/WD repeat-containing protein 1A isoform X3
- UniProtKB/TrEMBL
-
Q68DS0
-
XM_054367112.1 → XP_054223087.1 F-box/WD repeat-containing protein 1A isoform X4
- UniProtKB/TrEMBL
-
Q68DS0
-
XM_054367114.1 → XP_054223089.1 F-box/WD repeat-containing protein 1A isoform X7
- UniProtKB/TrEMBL
-
Q68DS0