NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_030968.5 → NP_112230.1 complement C1q tumor necrosis factor-related protein 1 isoform 1 precursor
See identical proteins and their annotated locations for NP_112230.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes isoform 1. Variants 1-3 encode the same protein.
- Source sequence(s)
-
AC073624, AY358424
- Consensus CDS
-
CCDS11761.1
- UniProtKB/Swiss-Prot
- Q6ZMH6, Q96NF2, Q9BXJ1, Q9GZR4
- UniProtKB/TrEMBL
-
A8K7L9
- Related
- ENSP00000463922.1, ENST00000579760.6
- Conserved Domains (2) summary
-
- pfam01391
Location:99 → 140
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:147 → 275
- C1q; C1q domain
-
NM_153372.3 → NP_699203.1 complement C1q tumor necrosis factor-related protein 1 isoform 1 precursor
See identical proteins and their annotated locations for NP_699203.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and represents the use of an alternate promoter, compared to variant 1. Variants 1-3 encode the same protein.
- Source sequence(s)
-
AC073624, AY358424, DA877694
- Consensus CDS
-
CCDS11761.1
- UniProtKB/Swiss-Prot
- Q6ZMH6, Q96NF2, Q9BXJ1, Q9GZR4
- UniProtKB/TrEMBL
-
A8K7L9
- Related
- ENSP00000343230.4, ENST00000354124.7
- Conserved Domains (2) summary
-
- pfam01391
Location:99 → 140
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:147 → 275
- C1q; C1q domain
-
NM_198593.4 → NP_940995.1 complement C1q tumor necrosis factor-related protein 1 isoform 1 precursor
See identical proteins and their annotated locations for NP_940995.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR and represents the use of an alternate promoter, compared to variant 1. Variants 1-3 encode the same protein.
- Source sequence(s)
-
AY358424, DB126803
- Consensus CDS
-
CCDS11761.1
- UniProtKB/Swiss-Prot
- Q6ZMH6, Q96NF2, Q9BXJ1, Q9GZR4
- UniProtKB/TrEMBL
-
A8K7L9
- Related
- ENSP00000462481.2, ENST00000581774.5
- Conserved Domains (2) summary
-
- pfam01391
Location:99 → 140
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:147 → 275
- C1q; C1q domain
-
NM_198594.4 → NP_940996.1 complement C1q tumor necrosis factor-related protein 1 isoform 2
See identical proteins and their annotated locations for NP_940996.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' coding region, compared to variant 1, which results in the use of an in-frame downstream start codon. This variant encodes a protein (isoform 2) with a shorter N-terminus that is predicted to lack a signal peptide, compared to isoform 1.
- Source sequence(s)
-
AY358424, BC021553, DA938689, HY047084
- Consensus CDS
-
CCDS11762.1
- UniProtKB/TrEMBL
-
A0A0C4DFP7
- Related
- ENSP00000311265.4, ENST00000311661.4
- Conserved Domains (2) summary
-
- pfam01391
Location:17 → 58
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:65 → 193
- C1q; C1q domain
RNA
-
NR_049769.3 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and represents the use of an alternate promoter, compared to variant 1. It is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest ORF; translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC073624, AK292034, AY358424, DA875119
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
79022934..79049788
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047435297.1 → XP_047291253.1 complement C1q tumor necrosis factor-related protein 1 isoform X4
- UniProtKB/Swiss-Prot
- Q6ZMH6, Q96NF2, Q9BXJ1, Q9GZR4
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_047435296.1 → XP_047291252.1 complement C1q tumor necrosis factor-related protein 1 isoform X2
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_006721664.2 → XP_006721727.1 complement C1q tumor necrosis factor-related protein 1 isoform X3
- UniProtKB/TrEMBL
-
A8K7L9
- Conserved Domains (2) summary
-
- pfam01391
Location:148 → 189
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:196 → 324
- C1q; C1q domain
-
XM_024450561.2 → XP_024306329.1 complement C1q tumor necrosis factor-related protein 1 isoform X4
- UniProtKB/Swiss-Prot
- Q6ZMH6, Q96NF2, Q9BXJ1, Q9GZR4
- UniProtKB/TrEMBL
-
A8K7L9
- Conserved Domains (2) summary
-
- pfam01391
Location:99 → 140
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:147 → 275
- C1q; C1q domain
-
XM_047435295.1 → XP_047291251.1 complement C1q tumor necrosis factor-related protein 1 isoform X2
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_006721666.2 → XP_006721729.1 complement C1q tumor necrosis factor-related protein 1 isoform X2
See identical proteins and their annotated locations for XP_006721729.1
- UniProtKB/TrEMBL
-
A8K7L9
- Conserved Domains (2) summary
-
- pfam01391
Location:109 → 150
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:157 → 285
- C1q; C1q domain
-
XM_006721663.1 → XP_006721726.1 complement C1q tumor necrosis factor-related protein 1 isoform X1
See identical proteins and their annotated locations for XP_006721726.1
- UniProtKB/TrEMBL
-
A0A3B0J271
- Conserved Domains (2) summary
-
- pfam01391
Location:197 → 238
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:245 → 373
- C1q; C1q domain
-
XM_017024126.1 → XP_016879615.1 complement C1q tumor necrosis factor-related protein 1 isoform X5
- UniProtKB/TrEMBL
-
A0A0C4DFP7
- Conserved Domains (2) summary
-
- pfam01391
Location:17 → 58
- Collagen; Collagen triple helix repeat (20 copies)
- pfam00386
Location:65 → 193
- C1q; C1q domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
79917861..79944721
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054314952.1 → XP_054170927.1 complement C1q tumor necrosis factor-related protein 1 isoform X4
- UniProtKB/Swiss-Prot
- Q6ZMH6, Q96NF2, Q9BXJ1, Q9GZR4
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_054314951.1 → XP_054170926.1 complement C1q tumor necrosis factor-related protein 1 isoform X2
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_054314949.1 → XP_054170924.1 complement C1q tumor necrosis factor-related protein 1 isoform X3
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_054314953.1 → XP_054170928.1 complement C1q tumor necrosis factor-related protein 1 isoform X4
- UniProtKB/Swiss-Prot
- Q6ZMH6, Q96NF2, Q9BXJ1, Q9GZR4
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_054314950.1 → XP_054170925.1 complement C1q tumor necrosis factor-related protein 1 isoform X2
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_054314948.1 → XP_054170923.1 complement C1q tumor necrosis factor-related protein 1 isoform X2
- UniProtKB/TrEMBL
-
A8K7L9
-
XM_054314947.1 → XP_054170922.1 complement C1q tumor necrosis factor-related protein 1 isoform X1
- UniProtKB/TrEMBL
-
A0A3B0J271
-
XM_054314954.1 → XP_054170929.1 complement C1q tumor necrosis factor-related protein 1 isoform X5
- UniProtKB/TrEMBL
-
A0A0C4DFP7