U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LDLR low density lipoprotein receptor [ Homo sapiens (human) ]

    Gene ID: 3949, updated on 3-Dec-2024

    Summary

    Official Symbol
    LDLRprovided by HGNC
    Official Full Name
    low density lipoprotein receptorprovided by HGNC
    Primary source
    HGNC:HGNC:6547
    See related
    Ensembl:ENSG00000130164 MIM:606945; AllianceGenome:HGNC:6547
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FH; FHC; FHCL1; LDLCQ2
    Summary
    The low density lipoprotein receptor (LDLR) gene family consists of cell surface proteins involved in receptor-mediated endocytosis of specific ligands. The encoded protein is normally bound at the cell membrane, where it binds low density lipoprotein/cholesterol and is taken into the cell. Lysosomes release the cholesterol, which is made available for repression of microsomal enzyme 3-hydroxy-3-methylglutaryl coenzyme A (HMG CoA) reductase, the rate-limiting step in cholesterol synthesis. At the same time, a reciprocal stimulation of cholesterol ester synthesis takes place. Mutations in this gene cause the autosomal dominant disorder, familial hypercholesterolemia. Alternate splicing results in multiple transcript variants.[provided by RefSeq, May 2022]
    Expression
    Ubiquitous expression in adrenal (RPKM 29.0), lung (RPKM 28.5) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LDLR in Genome Data Viewer
    Location:
    19p13.2
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (11089463..11133820)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (11216460..11260830)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (11200139..11244496)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10096 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:11046750-11047081 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:11048011-11048510 Neighboring gene translocase of inner mitochondrial membrane 29 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10097 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10098 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14000 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14001 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11087822-11088514 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11120526-11121026 Neighboring gene RNA, 7SL, cytoplasmic 192, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11138820-11139320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14002 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14003 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14005 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11167289-11167788 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11200393-11200988 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11200989-11201582 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr19:11202176-11203375 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:11205098-11206297 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:11212882-11213520 Neighboring gene LDLR antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11215560-11216060 Neighboring gene microRNA 6886 Neighboring gene VISTA enhancer hs1754 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10101 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11276922-11277422 Neighboring gene SPC24 component of NDC80 kinetochore complex Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11300095-11300596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11300597-11301096 Neighboring gene KN motif and ankyrin repeat domains 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10102 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10103

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    Professional guidelines

    Description
    Professional guideline
    ACMG 2013

    The ACMG recommends that laboratories performing clinical sequencing seek and report mutations in LDLR that are pathogenic or expected to be pathogenic.

    GuidelinePubMed

    Copy number response

    Description
    Copy number response
    Triplosensitivity

    No evidence available (Last evaluated 2021-10-27)

    ClinGen Genome Curation Page
    Haploinsufficency

    Sufficient evidence for dosage pathogenicity (Last evaluated 2021-10-27)

    ClinGen Genome Curation PagePubMed

    EBI GWAS Catalog

    Description
    A variant in LDLR is associated with abdominal aortic aneurysm.
    EBI GWAS Catalog
    Biological, clinical and population relevance of 95 loci for blood lipids.
    EBI GWAS Catalog
    Common variants at 30 loci contribute to polygenic dyslipidemia.
    EBI GWAS Catalog
    Discovery and refinement of loci associated with lipid levels.
    EBI GWAS Catalog
    Eight genetic loci associated with variation in lipoprotein-associated phospholipase A2 mass and activity and coronary heart disease: meta-analysis of genome-wide association studies from five community-based studies.
    EBI GWAS Catalog
    Forty-three loci associated with plasma lipoprotein size, concentration, and cholesterol content in genome-wide analysis.
    EBI GWAS Catalog
    Genetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.
    EBI GWAS Catalog
    Genetic variants influencing circulating lipid levels and risk of coronary artery disease.
    EBI GWAS Catalog
    Genome-wide association analysis of metabolic traits in a birth cohort from a founder population.
    EBI GWAS Catalog
    Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants.
    EBI GWAS Catalog
    Genome-wide association study identifies multiple loci influencing human serum metabolite levels.
    EBI GWAS Catalog
    Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
    EBI GWAS Catalog
    Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.
    EBI GWAS Catalog
    Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease.
    EBI GWAS Catalog
    Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.
    EBI GWAS Catalog
    Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.
    EBI GWAS Catalog
    Meta-analysis of genome-wide association studies from the CHARGE consortium identifies common variants associated with carotid intima media thickness and plaque.
    EBI GWAS Catalog
    Newly identified loci that influence lipid concentrations and risk of coronary artery disease.
    EBI GWAS Catalog
    Novel Loci for metabolic networks and multi-tissue expression studies reveal genes for atherosclerosis.
    EBI GWAS Catalog
    Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.
    EBI GWAS Catalog
    Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.
    EBI GWAS Catalog

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Envelope surface glycoprotein gp120 env HIV-1 gp120 is identified to have a physical interaction with low density lipoprotein receptor (LDLR) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed
    Envelope surface glycoprotein gp160, precursor env HIV-1 gp160 is identified to have a physical interaction with low density lipoprotein receptor (LDLR) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed
    Nef nef HIV-1 Nef expression in Jurkat cells upregulates LDLR, which is involved in cholesterol uptake PubMed
    Vif vif HIV-1 Vif upregulates the expression of low density lipoprotein receptor (LDLR) in Vif-expression T cells PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables amyloid-beta binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables clathrin heavy chain binding TAS
    Traceable Author Statement
    more info
    PubMed 
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables lipoprotein particle binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables low-density lipoprotein particle binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables low-density lipoprotein particle receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables low-density lipoprotein particle receptor activity IC
    Inferred by Curator
    more info
    PubMed 
    enables low-density lipoprotein particle receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables low-density lipoprotein particle receptor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables low-density lipoprotein particle receptor activity TAS
    Traceable Author Statement
    more info
    PubMed 
    enables molecular adaptor activity EXP
    Inferred from Experiment
    more info
    PubMed 
    enables protease binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables very-low-density lipoprotein particle receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables virus receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in amyloid-beta clearance ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in amyloid-beta clearance by cellular catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in artery morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to fatty acid IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to low-density lipoprotein particle stimulus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cholesterol homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in cholesterol homeostasis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in cholesterol homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cholesterol homeostasis TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in cholesterol import IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cholesterol import ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cholesterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cholesterol transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in cholesterol transport TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in endocytosis TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in high-density lipoprotein particle clearance IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in intestinal cholesterol absorption IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in lipid metabolic process TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in lipoprotein catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in long-term memory IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in low-density lipoprotein particle clearance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of amyloid fibril formation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of astrocyte activation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of low-density lipoprotein particle clearance IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of microglial cell activation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of protein metabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of receptor recycling IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in phagocytosis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in phospholipid transport ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in plasma lipoprotein particle clearance ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in plasma lipoprotein particle clearance TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in positive regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of inflammatory response IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of lysosomal protein catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of triglyceride biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in receptor-mediated endocytosis ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in receptor-mediated endocytosis TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in receptor-mediated endocytosis involved in cholesterol transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in receptor-mediated endocytosis involved in cholesterol transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of cholesterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of phosphatidylcholine catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of protein metabolic process IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in response to caloric restriction IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in symbiont entry into host cell IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of PCSK9-LDLR complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of PCSK9-LDLR complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    located_in apical part of cell ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in basolateral plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cell surface ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in clathrin-coated endocytic vesicle membrane TAS
    Traceable Author Statement
    more info
     
    located_in clathrin-coated pit IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in early endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in early endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endolysosome membrane TAS
    Traceable Author Statement
    more info
     
    located_in endosome membrane TAS
    Traceable Author Statement
    more info
     
    located_in external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in late endosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of low-density lipoprotein particle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in lysosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane HDA PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in plasma membrane TAS
    Traceable Author Statement
    more info
     
    part_of receptor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in somatodendritic compartment IEA
    Inferred from Electronic Annotation
    more info
     
    located_in sorting endosome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    low-density lipoprotein receptor
    Names
    LDL receptor
    low-density lipoprotein receptor class A domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009060.1 RefSeqGene

      Range
      4982..49450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_274

    mRNA and Protein(s)

    1. NM_000527.5NP_000518.1  low-density lipoprotein receptor isoform 1 precursor

      See identical proteins and their annotated locations for NP_000518.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
      Source sequence(s)
      AC011485, AY114155, BM785950, DC306821
      Consensus CDS
      CCDS12254.1
      UniProtKB/Swiss-Prot
      B4DII3, B4DJZ8, B4DR00, B4DTQ3, C0JYY8, H0YLU8, H0YNT7, P01130, Q53ZD9, Q59FQ1, Q9UDH7
      UniProtKB/TrEMBL
      Q9UH51
      Related
      ENSP00000454071.1, ENST00000558518.6
      Conserved Domains (5) summary
      smart00135
      Location:553595
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:354388
      EGF_CA; Calcium-binding EGF-like domain
      pfam00057
      Location:195231
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:529569
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:318346
      FXa_inhibition; Coagulation Factor Xa inhibitory site
    2. NM_001195798.2NP_001182727.1  low-density lipoprotein receptor isoform 2 precursor

      See identical proteins and their annotated locations for NP_001182727.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
      Source sequence(s)
      AB209409, AC011485, BM785950, DC306821
      Consensus CDS
      CCDS58651.1
      UniProtKB/TrEMBL
      Q9UH51
      Related
      ENSP00000453346.1, ENST00000558013.5
      Conserved Domains (5) summary
      smart00135
      Location:553595
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:354388
      EGF_CA; Calcium-binding EGF-like domain
      pfam00057
      Location:195231
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:529569
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:318346
      FXa_inhibition; Coagulation Factor Xa inhibitory site
    3. NM_001195799.2NP_001182728.1  low-density lipoprotein receptor isoform 3 precursor

      See identical proteins and their annotated locations for NP_001182728.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. The encoded isoform (3) is shorter than isoform 1.
      Source sequence(s)
      AC011485, AK300313, BM785950
      Consensus CDS
      CCDS56085.1
      UniProtKB/TrEMBL
      Q9UH51
      Related
      ENSP00000440520.1, ENST00000535915.5
      Conserved Domains (5) summary
      smart00135
      Location:512554
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:313347
      EGF_CA; Calcium-binding EGF-like domain
      pfam00057
      Location:154190
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:488528
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:277305
      FXa_inhibition; Coagulation Factor Xa inhibitory site
    4. NM_001195800.2NP_001182729.1  low-density lipoprotein receptor isoform 4 precursor

      See identical proteins and their annotated locations for NP_001182729.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) lacks two alternate in-frame exons in the 5' coding region, compared to variant 1. The encoded isoform (4) is shorter than isoform 1.
      Source sequence(s)
      AC011485, AK299038, BM785950
      Consensus CDS
      CCDS56084.1
      UniProtKB/TrEMBL
      A0AAQ5BHB8
      Related
      ENSP00000397829.2, ENST00000455727.6
      Conserved Domains (5) summary
      smart00135
      Location:385427
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:186220
      EGF_CA; Calcium-binding EGF-like domain
      pfam00057
      Location:2558
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:361401
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:150178
      FXa_inhibition; Coagulation Factor Xa inhibitory site
    5. NM_001195803.2NP_001182732.1  low-density lipoprotein receptor isoform 6 precursor

      See identical proteins and their annotated locations for NP_001182732.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (6) lacks an alternate in-frame exon in both the 5' and 3' coding regions, compared to variant 1. The encoded isoform (6) is shorter than isoform 1.
      Source sequence(s)
      AC011485, AK296312, BM785950
      Consensus CDS
      CCDS56083.1
      UniProtKB/TrEMBL
      A0AAQ5BHB8
      Related
      ENSP00000437639.1, ENST00000545707.5
      Conserved Domains (5) summary
      smart00135
      Location:426468
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:227261
      EGF_CA; Calcium-binding EGF-like domain
      pfam00057
      Location:2558
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:402442
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:191219
      FXa_inhibition; Coagulation Factor Xa inhibitory site
    6. NM_001406861.1NP_001393790.1  low-density lipoprotein receptor isoform 7

      Status: REVIEWED

      Source sequence(s)
      AC011485

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      11089463..11133820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011528010.3XP_011526312.1  low-density lipoprotein receptor isoform X1

      UniProtKB/TrEMBL
      Q9UH51
      Conserved Domains (6) summary
      smart00135
      Location:553595
      LY; Low-density lipoprotein-receptor YWTD domain
      smart00179
      Location:354388
      EGF_CA; Calcium-binding EGF-like domain
      pfam00057
      Location:195231
      Ldl_recept_a; Low-density lipoprotein receptor domain class A
      pfam00058
      Location:529569
      Ldl_recept_b; Low-density lipoprotein receptor repeat class B
      pfam14670
      Location:318346
      FXa_inhibition; Coagulation Factor Xa inhibitory site
      cl00104
      Location:278308
      LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    2. XM_047438831.1XP_047294787.1  low-density lipoprotein receptor isoform X2

      UniProtKB/TrEMBL
      H0YMQ3
      Related
      ENSP00000453696.2, ENST00000559340.2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      11216460..11260830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054321014.1XP_054176989.1  low-density lipoprotein receptor isoform X1

      UniProtKB/TrEMBL
      Q9UH51
    2. XM_054321015.1XP_054176990.1  low-density lipoprotein receptor isoform X2

      UniProtKB/TrEMBL
      H0YMQ3

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001195802.1: Suppressed sequence

      Description
      NM_001195802.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.