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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029604.2Â RefSeqGene
- Range
-
5076..168950
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001301085.2 → NP_001288014.1  KH domain-containing RNA-binding protein QKI isoform 5
See identical proteins and their annotated locations for NP_001288014.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an in-frame segment in the 3' coding region, compared to variant 1. The resulting isoform (5) is shorter compared to isoform 1.
- Source sequence(s)
-
AL031781, AL356119, AW131362, DQ323998
- Consensus CDS
-
CCDS75546.1
- UniProtKB/Swiss-Prot
-
Q96PU8
- Related
- ENSP00000354867.2, ENST00000361195.6
- Conserved Domains (4) summary
-
- PRK14950
Location:195 → 305
- PRK14950; DNA polymerase III subunits gamma and tau; Provisional
- pfam16544
Location:10 → 66
- STAR_dimer; Homodimerization region of STAR domain protein
- pfam16551
Location:304 → 333
- Quaking_NLS; Putative nuclear localization signal of quaking
- cd22465
Location:81 → 183
- KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins
-
NM_006775.3 → NP_006766.1  KH domain-containing RNA-binding protein QKI isoform 1
See identical proteins and their annotated locations for NP_006766.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1; also known as HQK-5 and QKI-5).
- Source sequence(s)
-
AB067798, AB067801, AF272349, AL031781, AW131362
- Consensus CDS
-
CCDS5285.1
- UniProtKB/Swiss-Prot
- Q2I375, Q5MJQ1, Q969L9, Q96EJ3, Q96KA3, Q96PU6, Q96PU7, Q96PU8, Q9P0X6, Q9P0X7, Q9P0X8, Q9P0X9, Q9P0Y0, Q9P0Y1
- Related
- ENSP00000355094.3, ENST00000361752.8
- Conserved Domains (4) summary
-
- PHA03247
Location:211 → 314
- PHA03247; large tegument protein UL36; Provisional
- pfam16544
Location:10 → 66
- STAR_dimer; Homodimerization region of STAR domain protein
- pfam16551
Location:312 → 341
- Quaking_NLS; Putative nuclear localization signal of quaking
- cd22465
Location:81 → 183
- KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins
-
NM_206853.3 → NP_996735.1  KH domain-containing RNA-binding protein QKI isoform 2
See identical proteins and their annotated locations for NP_996735.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 3' UTR and coding region compared to variant 1, which results in a frameshift. The resulting isoform (2; also known as HQK-6 and QKI-6) is shorter and has a distinct C-terminus compared to isoform 1. Isoforms 2 and 4 are the same length but have different C-termini.
- Source sequence(s)
-
AB067799, AB067801, AF142422, AF272349, AL031781, AW131362
- Consensus CDS
-
CCDS5286.1
- UniProtKB/Swiss-Prot
-
Q96PU8
- UniProtKB/TrEMBL
-
Q8WY44
- Related
- ENSP00000408775.2, ENST00000453779.6
- Conserved Domains (3) summary
-
- PRK14951
Location:210 → 281
- PRK14951; DNA polymerase III subunits gamma and tau; Provisional
- pfam16544
Location:10 → 66
- STAR_dimer; Homodimerization region of STAR domain protein
- cd22465
Location:81 → 183
- KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins
-
NM_206854.3 → NP_996736.1  KH domain-containing RNA-binding protein QKI isoform 3
See identical proteins and their annotated locations for NP_996736.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 3' UTR and coding region compared to variant 1, which results in a frameshift. The resulting isoform (3; also known as HQK-7 and QKI-7) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AB067800, AB067801, AF272349, AL031781, AW131362
- Consensus CDS
-
CCDS5287.1
- UniProtKB/Swiss-Prot
-
Q96PU8
- UniProtKB/TrEMBL
-
Q8WY44
- Related
- ENSP00000275262.7, ENST00000275262.11
- Conserved Domains (3) summary
-
- PRK14951
Location:210 → 281
- PRK14951; DNA polymerase III subunits gamma and tau; Provisional
- pfam16544
Location:10 → 66
- STAR_dimer; Homodimerization region of STAR domain protein
- cd22465
Location:81 → 183
- KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins
-
NM_206855.3 → NP_996737.1  KH domain-containing RNA-binding protein QKI isoform 4
See identical proteins and their annotated locations for NP_996737.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 3' UTR and coding region compared to variant 1, which results in a frameshift. The resulting isoform (4; also known as HQK-7B and QKI-7b) is shorter and has a distinct C-terminus compared to isoform 1. Isoforms 2 and 4 are the same length but have different C-termini.
- Source sequence(s)
-
AB067801, AF272349, AL031781, AW131362
- Consensus CDS
-
CCDS43525.1
- UniProtKB/Swiss-Prot
-
Q96PU8
- UniProtKB/TrEMBL
-
Q8WY44
- Related
- ENSP00000375973.2, ENST00000392127.6
- Conserved Domains (3) summary
-
- cd02395
Location:83 → 205
- SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
- pfam16544
Location:10 → 68
- STAR_dimer; Homodimerisation region of STAR domain protein
- cl26386
Location:210 → 281
- DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12Â Reference GRCh38.p14 Primary Assembly
- Range
-
163414718..163578592
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017011504.2 → XP_016866993.1  KH domain-containing RNA-binding protein QKI isoform X1
- Conserved Domains (3) summary
-
- PRK14971
Location:182 → 311
- PRK14971; DNA polymerase III subunit gamma/tau
- pfam16544
Location:10 → 66
- STAR_dimer; Homodimerization region of STAR domain protein
- cd22465
Location:81 → 183
- KH-I_Hqk; type I K homology (KH) RNA-binding domain found in protein quaking (Hqk) and similar proteins
-
XM_047419566.1 → XP_047275522.1  KH domain-containing RNA-binding protein QKI isoform X3
-
XM_011536260.3 → XP_011534562.1  KH domain-containing RNA-binding protein QKI isoform X2
- Conserved Domains (3) summary
-
- cd02395
Location:83 → 157
- SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
- pfam16544
Location:10 → 68
- STAR_dimer; Homodimerization region of STAR domain protein
- pfam16551
Location:266 → 293
- Quaking_NLS; Putative nuclear localization signal of quaking
-
XM_011536261.2 → XP_011534563.1  KH domain-containing RNA-binding protein QKI isoform X4
- Conserved Domains (2) summary
-
- cd02395
Location:83 → 183
- SF1_like-KH; Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 ...
- pfam16544
Location:10 → 68
- STAR_dimer; Homodimerization region of STAR domain protein
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1Â Alternate T2T-CHM13v2.0
- Range
-
164779884..164943697
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054356831.1 → XP_054212806.1  KH domain-containing RNA-binding protein QKI isoform X1
-
XM_054356833.1 → XP_054212808.1  KH domain-containing RNA-binding protein QKI isoform X3
-
XM_054356832.1 → XP_054212807.1  KH domain-containing RNA-binding protein QKI isoform X2
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XM_054356835.1 → XP_054212810.1  KH domain-containing RNA-binding protein QKI isoform X4
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XM_054356834.1 → XP_054212809.1  KH domain-containing RNA-binding protein QKI isoform X5
- UniProtKB/TrEMBL
-
H0YG47