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    LOC105373418 uncharacterized LOC105373418 [ Homo sapiens (human) ]

    Gene ID: 105373418, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105373418
    Gene description
    uncharacterized LOC105373418
    See related
    Ensembl:ENSG00000240687
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105373418 in Genome Data Viewer
    Location:
    2p25.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (9638745..9713299)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (9663787..9738320)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (9778874..9853428)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929643 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15280 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15281 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15282 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:9769712-9770614 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11137 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11138 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9789200-9789709 Neighboring gene NANOG hESC enhancer GRCh37_chr2:9790441-9791022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15285 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15287 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:9796459-9796960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15288 Neighboring gene NANOG hESC enhancer GRCh37_chr2:9797816-9798376 Neighboring gene uncharacterized LOC105373419 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:9832275-9833074 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15289 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15290 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15293 Neighboring gene uncharacterized LOC124905969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9893196-9893982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:9893983-9894769 Neighboring gene RNA, U4 small nuclear 73, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187862.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651

    2. NR_187863.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651

    3. NR_187864.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651

    4. NR_187865.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651

    5. NR_187866.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651

    6. NR_187867.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651

    7. NR_187868.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651
      Related
      ENST00000478468.1

    8. NR_187869.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651

    9. NR_187870.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC082651

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      9638745..9713299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      9663787..9738320
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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