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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_033229.3 → NP_150232.2 E3 ubiquitin-protein ligase TRIM15
Status: REVIEWED
- Source sequence(s)
-
AI739162, AL669914, BC038585, BP270476, U34249
- Consensus CDS
-
CCDS4677.1
- UniProtKB/Swiss-Prot
- A2BEC9, O95604, Q8IUX9, Q9C018, Q9C019
- UniProtKB/TrEMBL
- A0A0G2JJP1, A0A1U9X8P2, A6NEF7, A8K2L5, Q0EFD1, Q5SRL0
- Related
- ENSP00000365884.4, ENST00000376694.9
- Conserved Domains (5) summary
-
- smart00336
Location:80 → 119
- BBOX; B-Box-type zinc finger
- pfam09088
Location:252 → 327
- MIF4G_like; MIF4G like
- cd15826
Location:295 → 464
- SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
- cd16543
Location:16 → 61
- RING-HC_RNF135_like; RING finger, HC subclass, found in RING finger protein 135 (RNF135), tripartite motif-containing protein 15 (TRIM15) and similar proteins
- cl25732
Location:121 → 241
- SMC_N; RecF/RecN/SMC N terminal domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
30163546..30172693
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011514987.2 → XP_011513289.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
- Conserved Domains (2) summary
-
- pfam09088
Location:147 → 222
- MIF4G_like; MIF4G like
- cd15826
Location:190 → 359
- SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
-
XM_047419503.1 → XP_047275459.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
-
XM_011514988.3 → XP_011513290.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
- Conserved Domains (2) summary
-
- pfam09088
Location:45 → 120
- MIF4G_like; MIF4G like
- cd15826
Location:88 → 257
- SPRY_PRY_TRIM15; PRY/SPRY domain in tripartite motif-binding protein 15 (TRIM15)
Reference GRCh38.p14 ALT_REF_LOCI_1
Genomic
-
NT_167244.2 Reference GRCh38.p14 ALT_REF_LOCI_1
- Range
-
1421505..1430773
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054328524.1 → XP_054184499.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
-
XM_054328526.1 → XP_054184501.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
-
XM_054328525.1 → XP_054184500.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
Reference GRCh38.p14 ALT_REF_LOCI_2
Genomic
-
NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2
- Range
-
1643223..1652491
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054329926.1 → XP_054185901.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
-
XM_054329928.1 → XP_054185903.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
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XM_054329927.1 → XP_054185902.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
Reference GRCh38.p14 ALT_REF_LOCI_3
Genomic
-
NT_167245.2 Reference GRCh38.p14 ALT_REF_LOCI_3
- Range
-
1419326..1428594
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330419.1 → XP_054186394.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
-
XM_054330421.1 → XP_054186396.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
-
XM_054330420.1 → XP_054186395.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
Reference GRCh38.p14 ALT_REF_LOCI_4
Genomic
-
NT_167246.2 Reference GRCh38.p14 ALT_REF_LOCI_4
- Range
-
1474127..1483395
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330692.1 → XP_054186667.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
-
XM_054330694.1 → XP_054186669.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
-
XM_054330693.1 → XP_054186668.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
Reference GRCh38.p14 ALT_REF_LOCI_5
Genomic
-
NT_167247.2 Reference GRCh38.p14 ALT_REF_LOCI_5
- Range
-
1507498..1516766
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054330912.1 → XP_054186887.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
-
XM_054330914.1 → XP_054186889.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
-
XM_054330913.1 → XP_054186888.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
Reference GRCh38.p14 ALT_REF_LOCI_6
Genomic
-
NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6
- Range
-
1418553..1427821
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054331191.1 → XP_054187166.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
-
XM_054331193.1 → XP_054187168.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
-
XM_054331192.1 → XP_054187167.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
Reference GRCh38.p14 ALT_REF_LOCI_7
Genomic
-
NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7
- Range
-
1462356..1471624
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054331433.1 → XP_054187408.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
-
XM_054331435.1 → XP_054187410.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
-
XM_054331434.1 → XP_054187409.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
30027684..30036952
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054356712.1 → XP_054212687.1 E3 ubiquitin-protein ligase TRIM15 isoform X1
-
XM_054356714.1 → XP_054212689.1 E3 ubiquitin-protein ligase TRIM15 isoform X3
-
XM_054356713.1 → XP_054212688.1 E3 ubiquitin-protein ligase TRIM15 isoform X2
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_052812.1: Suppressed sequence
- Description
- NM_052812.1: This RefSeq was permanently suppressed because currently there is not sufficient data to support this transcript.