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    nuclear pore complex Nup85-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829427, updated on 18-Sep-2024

    Summary

    Official Full Name
    nuclear pore complex Nup85-like protein
    Primary source
    TAIR:AT4G32910
    Locus tag
    AT4G32910
    See related
    Araport:AT4G32910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 4
    Exon count:
    18
    Sequence:
    Chromosome: 4; NC_003075.7 (15881245..15885518)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 9 Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein Neighboring gene glutamyl-tRNA(Gln) amidotransferase subunit C Neighboring gene glycine-rich protein

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_119444.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA export from nucleus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    nuclear pore complex Nup85-like protein
    NP_567908.1
    • CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      15881245..15885518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119444.4NP_567908.1  nuclear pore complex Nup85-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567908.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RXH2, Q9ASW9
      UniProtKB/TrEMBL
      A0A178V2H2, A0A5S9XY33, A0A7G2F5J0
      Conserved Domains (1) summary
      pfam07575
      Location:73677
      Nucleopor_Nup85; Nup85 Nucleoporin