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    LOC4334756 PTI1-like tyrosine-protein kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334756, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334756
    Gene description
    PTI1-like tyrosine-protein kinase 1
    Locus tag
    OSNPB_030844100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334756 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36453784..36459397, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35480666..35486342, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At3g01580 Neighboring gene uncharacterized LOC4334755 Neighboring gene U1 spliceosomal RNA Neighboring gene exosome complex component RRP41-like Neighboring gene serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein tyrosine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PTI1-like tyrosine-protein kinase 1
    Names
    Os03g0844100
    Os03g0844301

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36453784..36459397 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777358.2 → XP_015632844.1  PTI1-like tyrosine-protein kinase 1

      UniProtKB/TrEMBL
      B8AN83, B9F7J5, Q75LD0
      Conserved Domains (1) summary
      cl21453
      Location:75 → 349
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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