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    LOC4351341 uncharacterized LOC4351341 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351341, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4351341
    Gene description
    uncharacterized LOC4351341
    Locus tag
    OSNPB_120118400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351341 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (915920..922530)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (891775..898414)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351337 Neighboring gene uncharacterized LOC4351339 Neighboring gene uncharacterized LOC4351343 Neighboring gene uncharacterized LOC4351344 Neighboring gene cytochrome P450 714C1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351341
    Names
    Os12g0118400
    dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system
    fertility-related ORF2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      915920..922530
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764427.3 → XP_015619913.1  uncharacterized protein LOC4351341 isoform X3

      UniProtKB/TrEMBL
      Q0IQI9, Q2QYI1
      Conserved Domains (1) summary
      COG0596
      Location:108 → 450
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    2. XM_015764424.3 → XP_015619910.1  uncharacterized protein LOC4351341 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y5Y3, B9GBJ7, Q0IQI9, Q2QYI3
      Conserved Domains (2) summary
      PLN03192
      Location:1 → 73
      PLN03192; Voltage-dependent potassium channel; Provisional
      COG0596
      Location:171 → 513
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    3. XM_015764426.3 → XP_015619912.1  uncharacterized protein LOC4351341 isoform X3

      UniProtKB/TrEMBL
      Q0IQI9, Q2QYI1
      Conserved Domains (1) summary
      COG0596
      Location:108 → 450
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]

    4. XM_015764425.3 → XP_015619911.1  uncharacterized protein LOC4351341 isoform X2

      UniProtKB/TrEMBL
      Q0IQI9
      Conserved Domains (1) summary
      COG0596
      Location:128 → 470
      MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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