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    LOC4326027 respiratory burst oxidase homolog protein B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326027, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326027
    Gene description
    respiratory burst oxidase homolog protein B-like
    Locus tag
    OSNPB_010360200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RBOHB; OsrbohB; OsJ_01746
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    Genomic context

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    See LOC4326027 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (14667234..14673667, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (14621295..14627952, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351273 Neighboring gene putative disease resistance protein RGA4 Neighboring gene disease resistance protein RGA2 Neighboring gene uncharacterized LOC136356567 Neighboring gene dephospho-CoA kinase-like Neighboring gene uncharacterized LOC4326029

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice. Shi Y, et al. Plant Cell Rep, 2020 Dec. PMID 32980968
    2. Focal Accumulation of ROS Can Block Pyricularia oryzae Effector BAS4-Expression and Prevent Infection in Rice. Chen Y, et al. Int J Mol Sci, 2020 Aug 27. PMID 32867341, Free PMC Article
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.
      Title: OsRbohB-mediated ROS production plays a crucial role in drought stress tolerance of rice.
    2. Focal Accumulation of ROS Can Block Pyricularia oryzae Effector BAS4-Expression and Prevent Infection in Rice.
      Title: Focal Accumulation of ROS Can Block Pyricularia oryzae Effector BAS4-Expression and Prevent Infection in Rice.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD(P)H oxidase H2O2-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    respiratory burst oxidase homolog protein B
    Names
    B1164G11.26
    LOC_Os01g25820
    NADPH oxidase RBOHB
    respiratory burst oxidase protein B
    NP_001388500.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401571.1 → NP_001388500.1  respiratory burst oxidase homolog protein B

      Status: VALIDATED

      Source sequence(s)
      AK065117, AU086063, CB683222, CF281044, D46291
      UniProtKB/Swiss-Prot
      A0A0P0V2T2, Q5ZAJ0, Q6J2K5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      14667234..14673667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZAJ0.1 GenPept UniProtKB/Swiss-Prot:Q5ZAJ0

    Gene LinkOut

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