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    LOC4343515 oxygen-evolving enhancer protein 3, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343515, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4343515
    Gene description
    oxygen-evolving enhancer protein 3, chloroplastic-like
    Locus tag
    OSNPB_070544800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LP02; OEE3; OJ1582_D10.19
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    Genomic context

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    See LOC4343515 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21802488..21804019)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21574430..21575921)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene large ribosomal subunit protein bL28m Neighboring gene protein VASCULATURE COMPLEXITY AND CONNECTIVITY Neighboring gene uncharacterized LOC124708996 Neighboring gene probable histone H2A.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photosynthetic electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxygen-evolving enhancer protein 3, chloroplastic
    Names
    LOC_Os07g36080
    putative Oxygen-evolving enhancer protein 3-1, chloroplast precursor (OEE3)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403107.1 → NP_001390036.1  oxygen-evolving enhancer protein 3, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CB636975, CI300576, CI562624
      UniProtKB/Swiss-Prot
      A2YMC2, B7EFZ9, P83646, Q0D5P8, Q6ZL48
      UniProtKB/TrEMBL
      A3BKU8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21802488..21804019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0D5P8.1 GenPept UniProtKB/Swiss-Prot:Q0D5P8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials