U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4341687 magnesium transporter MRS2-B-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341687, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4341687
    Gene description
    magnesium transporter MRS2-B-like
    Locus tag
    OSNPB_060650800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MRS2-B
    Expression
    Broad expression in mature seeds (RPKM 39.8), flowers (RPKM 17.3) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (27498915..27503766, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (26634906..26639777, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene acetyl transferase GW6a-like Neighboring gene transmembrane 9 superfamily member 9 Neighboring gene uncharacterized LOC112939307 Neighboring gene chaperone protein dnaJ 8, chloroplastic Neighboring gene NADPH HC-toxin reductase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    magnesium transporter MRS2-B
    Names
    LOC_Os06g44150
    P0453H04.31
    magnesium transporter CorA-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402905.1NP_001389834.1  magnesium transporter MRS2-B

      Status: VALIDATED

      Source sequence(s)
      AK071905, CI175239, CI424941, CI674398
      UniProtKB/Swiss-Prot
      A0A0P0WZR6, A2YFN7, Q67UQ7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      27498915..27503766 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311171.1XP_066167268.1  magnesium transporter MRS2-B isoform X1