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    LOC4338756 nucleoside hydrolase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338756, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4338756
    Gene description
    nucleoside hydrolase 3
    Locus tag
    OSNPB_050406100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CPN1
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    Genomic context

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    See LOC4338756 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (19882331..19888063, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (19780170..19786021, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 18h Neighboring gene uncharacterized protein At4g15545 Neighboring gene nucleoside hydrolase 3 Neighboring gene uncharacterized LOC136356442 Neighboring gene uncharacterized LOC107280885

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoside hydrolase 3
    Names
    Os05g0406100
    cytokinin/purine riboside nucleosidase1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      19882331..19888063 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784427.3 → XP_015639913.1  nucleoside hydrolase 3 isoform X1

      UniProtKB/TrEMBL
      B8AY82
      Conserved Domains (2) summary
      cd02647
      Location:515 → 856
      nuc_hydro_TvIAG; nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. ...
      cl00226
      Location:60 → 399
      nuc_hydro; nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal ...

    2. XM_015784428.3 → XP_015639914.1  nucleoside hydrolase 3 isoform X2

      UniProtKB/TrEMBL
      B9FPJ7
      Conserved Domains (2) summary
      cd02647
      Location:401 → 742
      nuc_hydro_TvIAG; nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. ...
      cl00226
      Location:25 → 285
      nuc_hydro; Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar ...

    3. XM_015784430.3 → XP_015639916.1  nucleoside hydrolase 3 isoform X3

      UniProtKB/TrEMBL
      A0A0P0WM38, B9FPJ7, Q0DI97
      Conserved Domains (2) summary
      cd02647
      Location:372 → 713
      nuc_hydro_TvIAG; nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. ...
      cl00226
      Location:14 → 256
      nuc_hydro; Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar ...
    Nucleotide Protein
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