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    LOC4338968 phosphatidylinositol:ceramide inositolphosphotransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338968, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4338968
    Gene description
    phosphatidylinositol:ceramide inositolphosphotransferase
    Locus tag
    OSNPB_050452900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338968 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22328097..22333014, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22214571..22219612, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351123 Neighboring gene small nucleolar RNA snoR26 Neighboring gene uncharacterized LOC4338967 Neighboring gene uncharacterized LOC136356682 Neighboring gene uncharacterized LOC4338970

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ceramide cholinephosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables inositol phosphoceramide synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphingomyelin synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol:ceramide inositolphosphotransferase
    Names
    Os05g0452900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22328097..22333014 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025793.2 → XP_025881578.1  phosphatidylinositol:ceramide inositolphosphotransferase isoform X2

      UniProtKB/TrEMBL
      B8AYS7, B9FPX4
      Conserved Domains (1) summary
      pfam14360
      Location:149 → 217
      PAP2_C; PAP2 superfamily C-terminal

    2. XM_015781930.3 → XP_015637416.1  phosphatidylinositol:ceramide inositolphosphotransferase isoform X1

      UniProtKB/TrEMBL
      A0A0P0WNA9, B8AYS7, Q6I647
      Conserved Domains (1) summary
      pfam14360
      Location:172 → 240
      PAP2_C; PAP2 superfamily C-terminal
    Nucleotide Protein
    Heading Accession and Version

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