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    LOC4329767 2-hydroxy-palmitic acid dioxygenase MPO1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329767, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329767
    Gene description
    2-hydroxy-palmitic acid dioxygenase MPO1
    Locus tag
    OSNPB_020578800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1267B06.7
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    Genomic context

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    See LOC4329767 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22726449..22728902)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22244981..22247595)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene 7-deoxyloganetin glucosyltransferase Neighboring gene casparian strip membrane protein 5 Neighboring gene photosynthetic NDH subunit of lumenal location 2, chloroplastic Neighboring gene NAC domain-containing protein 4-like Neighboring gene transfer RNA tryptophan (anticodon CCA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sphingoid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-hydroxy-palmitic acid dioxygenase MPO1
    Names
    Os02g0578800
    YGL010w-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      22726449..22728902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767510.2 → XP_015622996.1  2-hydroxy-palmitic acid dioxygenase MPO1

      UniProtKB/TrEMBL
      A0A0P0VKY3, B8AED1, B9F0Q7, Q6EP55
      Conserved Domains (1) summary
      cl01879
      Location:9 → 159
      DUF962; Protein of unknown function (DUF962)
    Nucleotide Protein
    Heading Accession and Version

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