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    LOC4337074 homeobox-leucine zipper protein ROC2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337074, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4337074
    Gene description
    homeobox-leucine zipper protein ROC2-like
    Locus tag
    OSNPB_040627000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Roc2; GL2-2
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    Genomic context

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    See LOC4337074 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32407814..32414813, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31900204..31907135, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene FBD-associated F-box protein At1g66310-like Neighboring gene putative F-box/FBD/LRR-repeat protein At5g56810 Neighboring gene uncharacterized LOC4337073 Neighboring gene uncharacterized LOC107278467 Neighboring gene uncharacterized LOC136356376

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein ROC2
    Names
    GL2-type homeodomain protein
    GLABRA 2-like homeobox protein 2
    HD-ZIP protein ROC2
    Homeodomain transcription factor ROC2
    LOC_Os04g53540
    OSJNBb0060E08.16
    Protein RICE OUTERMOST CELL-SPECIFIC 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402432.1 → NP_001389361.1  homeobox-leucine zipper protein ROC2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB101645, AK065819, CB683722, CI036511, CI308976
      UniProtKB/Swiss-Prot
      Q0J9X2, Q7XM83, Q7Y0W1
      UniProtKB/TrEMBL
      B8AUT5

    2. NM_001402433.1 → NP_001389362.1  homeobox-leucine zipper protein ROC2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AB101645, AK065819, CB683722, CI036511, CI639617
      UniProtKB/Swiss-Prot
      Q0J9X2, Q7XM83, Q7Y0W1
      UniProtKB/TrEMBL
      B8AUT5

    3. NM_001402434.1 → NP_001389363.1  homeobox-leucine zipper protein ROC2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AB101645, AK065819, CB683722, CI036511, CI741430
      UniProtKB/TrEMBL
      Q00RL2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32407814..32414813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0J9X2.1 GenPept UniProtKB/Swiss-Prot:Q0J9X2

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