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    LOC4325890 auxin-responsive protein IAA3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325890, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4325890
    Gene description
    auxin-responsive protein IAA3-like
    Locus tag
    OSNPB_010231000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    IAA3
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    Genomic context

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    See LOC4325890 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7260743..7264729)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7249755..7253758)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH68 Neighboring gene uncharacterized LOC9269785 Neighboring gene uncharacterized LOC107278458 Neighboring gene uncharacterized LOC136357548

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gnp4/LAX2, a RAWUL protein, interferes with the OsIAA3-OsARF25 interaction to regulate grain length via the auxin signaling pathway in rice. Zhang Z, et al. J Exp Bot, 2018 Sep 14. PMID 30295905, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin-responsive protein IAA3
    Names
    Indoleacetic acid-induced protein 3
    LOC_Os01g13030
    P0431F01.14
    P0485D09.31
    putative aux/IAA protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401528.1 → NP_001388457.1  auxin-responsive protein IAA3

      Status: VALIDATED

      Source sequence(s)
      AU083011, CB651031, CB656693
      UniProtKB/Swiss-Prot
      Q0JPB9, Q5NB25
      UniProtKB/TrEMBL
      B8AB09

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7260743..7264729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5NB25.1 GenPept UniProtKB/Swiss-Prot:Q5NB25

    Gene LinkOut

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    Research Materials