LOC4341657 uncharacterized methyltransferase At2g41040, chloroplastic [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4341657
Gene description: uncharacterized methyltransferase At2g41040, chloroplastic
Locus tag: OSNPB_060646000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OJ1226_A12.7
Expression: Broad expression in leaves before flowering (RPKM 86.2), roots after flowering (RPKM 66.3) and 4 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (26375975..26379222, complement)

Chromosome 6 - NC_029261.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables S-adenosylmethionine-dependent methyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: uncharacterized methyltransferase At2g41040, chloroplastic

Names: Os06g0646000; P0017B12.33; methyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001428231.1 → NP_001415160.1 uncharacterized methyltransferase At2g41040, chloroplastic

Status: VALIDATED

Source sequence(s)

AK068674, CI535729

UniProtKB/TrEMBL

B8B0Q7, Q0DAL3, Q67W64

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029261.1 Reference IRGSP-1.0 Primary Assembly

Range

26375975..26379222 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015785877.2 → XP_015641363.1 uncharacterized methyltransferase At2g41040, chloroplastic

Conserved Domains (1) summary

pfam08241
Location:177 → 277

Methyltransf_11; Methyltransferase domain