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    LOC4345165 tobamovirus multiplication protein 2A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345165, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345165
    Gene description
    tobamovirus multiplication protein 2A
    Locus tag
    OSNPB_080282000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1446H11.6
    Expression
    Ubiquitous expression in flower buds (RPKM 38.4), roots before flowering (RPKM 36.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (11112785..11119825, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (11055445..11062518, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936220 Neighboring gene putative F-box/LRR-repeat protein At5g38386 Neighboring gene uncharacterized LOC4345166 Neighboring gene alpha-soluble NSF attachment protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tobamovirus multiplication protein 2A
    Names
    Os08g0282000
    senescence-associated protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      11112785..11119825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795483.3 → XP_015650969.1  tobamovirus multiplication protein 2A

      UniProtKB/TrEMBL
      A0A0P0XDS4, Q6YS19
      Conserved Domains (1) summary
      pfam00335
      Location:9 → 137
      Tetraspannin; Tetraspanin family
    Nucleotide Protein
    Heading Accession and Version

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