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    LOC4327083 uncharacterized LOC4327083 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327083, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327083
    Gene description
    uncharacterized LOC4327083
    Locus tag
    OSNPB_010205100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327083 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5769990..5774178)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5760367..5764641)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 Neighboring gene pentatricopeptide repeat-containing protein DOT4, chloroplastic Neighboring gene uncharacterized LOC4327085 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327083
    Names
    Os01g0205100
    P0451C06.21
    WD repeat-containing protein 53
    putative G-protein beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5769990..5774178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766263.2 → XP_015621749.1  uncharacterized protein LOC4327083 isoform X1

      Conserved Domains (3) summary
      COG2319
      Location:13 → 357
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:26 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:11 → 336
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015766264.3 → XP_015621750.1  uncharacterized protein LOC4327083 isoform X2

      UniProtKB/TrEMBL
      A0A0P0UZL4, A0A979HKM8, A2ZQG5, B8A6L5, Q0JPS8, Q5QNL8
      Conserved Domains (2) summary
      sd00039
      Location:30 → 65
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:11 → 328
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RNA

    1. XR_010736425.1 RNA Sequence

    2. XR_010736427.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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