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    LOC4327093 CBL-interacting protein kinase 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327093, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4327093
    Gene description
    CBL-interacting protein kinase 5-like
    Locus tag
    OSNPB_010206700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CIPK5; OsCIPK05; OsJ_000797
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    Genomic context

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    See LOC4327093 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5819131..5821087, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5809573..5811630, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative CBL-interacting protein kinase 13 Neighboring gene uncharacterized LOC9271100 Neighboring gene protein MALE DISCOVERER 2 Neighboring gene peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CBL-interacting protein kinase 5
    Names
    LOC_Os01g10890
    OSJNBa0016I09.5
    P0451C06.36
    putative CBL-interacting protein kinase 2
    NP_001393227.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406298.1 → NP_001393227.1  CBL-interacting protein kinase 5

      Status: VALIDATED

      Source sequence(s)
      AP014957, CF293959, CF294563, CI356266, EU703795
      UniProtKB/Swiss-Prot
      Q9LWM4
      UniProtKB/TrEMBL
      A2WLW5, B3GLZ8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5819131..5821087 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LWM4.1 GenPept UniProtKB/Swiss-Prot:Q9LWM4

    Gene LinkOut

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