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    LOC4346450 DNA polymerase alpha-associated DNA helicase A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346450, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4346450
    Gene description
    DNA polymerase alpha-associated DNA helicase A
    Locus tag
    OSNPB_090130800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 24.3), roots after flowering (RPKM 21.9) and 6 other tissues See more
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    Genomic context

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    See LOC4346450 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (6375736..6383051, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (2354899..2362144, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351876 Neighboring gene uncharacterized LOC136351667 Neighboring gene uncharacterized LOC4346451 Neighboring gene receptor-like protein 44

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA polymerase alpha-associated DNA helicase A
    Names
    DNA helicase-like
    DNA-binding protein SMUBP-2
    Os09g0130800
    P0433B06.14-1
    P0448B11.50-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      6375736..6383051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756459.3 → XP_015611945.1  DNA polymerase alpha-associated DNA helicase A isoform X2

      UniProtKB/TrEMBL
      B8BD90
      Conserved Domains (1) summary
      TIGR00376
      Location:149 → 816
      TIGR00376; DNA helicase, putative

    2. XM_026020260.2 → XP_025876045.1  DNA polymerase alpha-associated DNA helicase A isoform X1

      UniProtKB/TrEMBL
      B8BD90, B9G276, Q0J3D0
      Conserved Domains (1) summary
      TIGR00376
      Location:290 → 957
      TIGR00376; DNA helicase, putative

    3. XM_066304137.1 → XP_066160234.1  DNA polymerase alpha-associated DNA helicase A isoform X2

      UniProtKB/TrEMBL
      B8BD90

    4. XM_066304136.1 → XP_066160233.1  DNA polymerase alpha-associated DNA helicase A isoform X2

      UniProtKB/TrEMBL
      B8BD90
    Nucleotide Protein
    Heading Accession and Version

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