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    LOC4349035 pentatricopeptide repeat-containing protein At2g20710, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349035, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349035
    Gene description
    pentatricopeptide repeat-containing protein At2g20710, mitochondrial
    Locus tag
    OSNPB_100501000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349035 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (19795827..19797385)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (19104090..19105746)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene Monothiol glutaredoxin-S11 Neighboring gene monothiol glutaredoxin-S11-like Neighboring gene pentatricopeptide repeat-containing protein At2g20710, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At2g20710, mitochondrial Neighboring gene uncharacterized LOC107278530

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At2g20710, mitochondrial
    Names
    Os10g0501000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      19795827..19797385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758931.3 → XP_015614417.1  pentatricopeptide repeat-containing protein At2g20710, mitochondrial

      UniProtKB/TrEMBL
      Q337G1, Q8LNG1
      Conserved Domains (3) summary
      TIGR00756
      Location:81 → 115
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:48 → 75
      PPR; PPR repeat [structural motif]
      cl03252
      Location:194 → 215
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version

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