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    LOC4340671 protein CHROMATIN REMODELING 35 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340671, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4340671
    Gene description
    protein CHROMATIN REMODELING 35
    Locus tag
    OSNPB_060255700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0624H09.1
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    Genomic context

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    See LOC4340671 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (8266500..8273412)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (8097228..8104252)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene chromatin structure-remodeling complex protein SYD Neighboring gene nudix hydrolase 21, chloroplastic Neighboring gene exocyst complex component EXO70A1-like Neighboring gene uncharacterized LOC4340672 Neighboring gene uncharacterized LOC9269856

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CHROMATIN REMODELING 35
    Names
    Os06g0255700
    P0592E11.27
    putative DNA repair protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      8266500..8273412
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311215.1 → XP_066167312.1  protein CHROMATIN REMODELING 35 isoform X1

      UniProtKB/TrEMBL
      B9FSK6

    2. XM_015788042.3 → XP_015643528.1  protein CHROMATIN REMODELING 35 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WVB5, B9FSK6, Q652G9
      Conserved Domains (2) summary
      COG0553
      Location:359 → 917
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cl28899
      Location:405 → 600
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    3. XM_066311214.1 → XP_066167311.1  protein CHROMATIN REMODELING 35 isoform X1

      UniProtKB/TrEMBL
      B9FSK6

    4. XM_015788041.3 → XP_015643527.1  protein CHROMATIN REMODELING 35 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WVB5, B9FSK6, Q652G9
      Conserved Domains (2) summary
      COG0553
      Location:359 → 917
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cl28899
      Location:405 → 600
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    5. XM_015788040.3 → XP_015643526.1  protein CHROMATIN REMODELING 35 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WVB5, B9FSK6, Q652G9
      Conserved Domains (2) summary
      COG0553
      Location:359 → 917
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cl28899
      Location:405 → 600
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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