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    LOC4340074 nudix hydrolase 19, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340074, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340074
    Gene description
    nudix hydrolase 19, chloroplastic
    Locus tag
    OSNPB_060141166
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0535G04.4
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 21.0), roots before flowering (RPKM 19.7) and 6 other tissues See more
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    Genomic context

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    See LOC4340074 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2314902..2318043, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2157500..2160629, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 35 Neighboring gene hexose carrier protein HEX6 Neighboring gene RNA-binding protein involved in heterochromatin assembly dri1 Neighboring gene early nodulin-93

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NADH pyrophosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NAD catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in NADH metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in NADP catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nudix hydrolase 19, chloroplastic
    Names
    MutT/nudix protein-like
    Os06g0141166

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2314902..2318043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785757.3 → XP_015641243.1  nudix hydrolase 19, chloroplastic

      UniProtKB/TrEMBL
      A2Y937, Q0DEQ2, Q5VSC2
      Conserved Domains (1) summary
      COG2816
      Location:95 → 391
      NPY1; NADH pyrophosphatase NudC, Nudix superfamily [Nucleotide transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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