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    LOC4331514 probable signal recognition particle 43 kDa protein, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331514, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4331514
    Gene description
    probable signal recognition particle 43 kDa protein, chloroplastic
    Locus tag
    OSNPB_030131900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_09298; OJ1004C08.7
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (1825451..1826833, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1817496..1818918, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene thiol-disulfide oxidoreductase LTO1 Neighboring gene uncharacterized LOC107276394 Neighboring gene 4-coumarate--CoA ligase-like 4 Neighboring gene expansin-like A1 Neighboring gene uncharacterized LOC136355566

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice. Ye J, et al. J Zhejiang Univ Sci B, 2018 Apr.. PMID 29616502, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. rice PGL3 is required for chlorophyll synthesis and impacts leaf senescence
      Title: PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable signal recognition particle 43 kDa protein, chloroplastic
    Names
    LOC_Os03g03990

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417176.1 → NP_001404105.1  probable signal recognition particle 43 kDa protein, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK099900, AP014959
      UniProtKB/Swiss-Prot
      A3ADT6, B9FAX9, Q0DVF8, Q10S73, Q8LSQ2
      UniProtKB/TrEMBL
      A2XC41

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      1825451..1826833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LSQ2.1 GenPept UniProtKB/Swiss-Prot:Q8LSQ2

    Gene LinkOut

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