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    LOC4343349 methionine aminopeptidase 1B, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343349, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343349
    Gene description
    methionine aminopeptidase 1B, chloroplastic
    Locus tag
    OSNPB_070510100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 58.3), flower buds (RPKM 22.2) and 4 other tissues See more
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    Genomic context

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    See LOC4343349 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19654767..19659005)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19427890..19432189)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable 5'-adenylylsulfate reductase 1, chloroplastic Neighboring gene uncharacterized LOC136357523 Neighboring gene uncharacterized LOC136357144 Neighboring gene glucan endo-1,3-beta-glucosidase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloaminopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    methionine aminopeptidase 1B, chloroplastic
    Names
    Os07g0510100
    P0409B11.17
    putative methionine aminopeptidase I (MAP1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      19654767..19659005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789688.3 → XP_015645174.1  methionine aminopeptidase 1B, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0X790, Q6Z4B5
      Conserved Domains (1) summary
      cd01086
      Location:120 → 356
      MetAP1; Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
    Nucleotide Protein
    Heading Accession and Version

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