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    LOC4342601 SEC12-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342601, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342601
    Gene description
    SEC12-like protein 1
    Locus tag
    OSNPB_070187700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342601 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4743412..4748432)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4682485..4687647)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein RZ1C Neighboring gene protein SEEDLING PLASTID DEVELOPMENT 1 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4 Neighboring gene protein argonaute 14-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of COPII vesicle coating IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SEC12-like protein 1
    Names
    OSJNBb0084L07.11
    Os07g0187700
    transducin / WD-40 repeat protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4743412..4748432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792080.2 → XP_015647566.1  SEC12-like protein 1

      UniProtKB/TrEMBL
      A0A0N7KN19, A3BHC0, B8B7X9, Q6Z4F3
      Conserved Domains (3) summary
      COG2319
      Location:72 → 311
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:120 → 157
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:121 → 311
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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