U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4341108 GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341108, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4341108
    Gene description
    GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic
    Locus tag
    OSNPB_060498900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4341108 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (18399536..18402886)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (17550094..17553470)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 20 Neighboring gene protein MOTHER of FT and TFL1 homolog 1-like Neighboring gene uncharacterized LOC4341109 Neighboring gene uncharacterized LOC107277573

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brassinosteroid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chloroplast rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic
    Names
    Os06g0498900
    P0596H06.14
    putative GTPase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      18399536..18402886
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785400.3 → XP_015640886.1  GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KM60, A2YD99, Q0DC07, Q656A4
      Conserved Domains (2) summary
      PRK13796
      Location:248 → 625
      PRK13796; GTPase YqeH; Provisional
      pfam16543
      Location:207 → 251
      DFRP_C; DRG Family Regulatory Proteins, Tma46
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials