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    LOC4336617 scarecrow-like protein 27 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336617, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336617
    Gene description
    scarecrow-like protein 27
    Locus tag
    OSNPB_040555000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336617 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28269871..28272512)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27764521..27767341)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene 14 kDa proline-rich protein DC2.15 Neighboring gene pEARLI1-like lipid transfer protein 1 Neighboring gene putative glycerol-3-phosphate transporter 1 Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp31 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scarecrow-like protein 27
    Names
    Os04g0555000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      28269871..28272512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781657.3 → XP_015637143.1  scarecrow-like protein 27

      UniProtKB/TrEMBL
      A0A5S6R9I2, A2XWA3, Q7X6X2, Q7XT28
      Conserved Domains (1) summary
      pfam03514
      Location:352 → 710
      GRAS; GRAS domain family
    Nucleotide Protein
    Heading Accession and Version

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