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    LOC4339756 jasmonic acid-amido synthetase JAR1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339756, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339756
    Gene description
    jasmonic acid-amido synthetase JAR1-like
    Locus tag
    OSNPB_050586200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    JAR1; GH3.5; OsJAR1; OsGH3-5; OsJ_19714
    Expression
    Ubiquitous expression in roots before flowering (RPKM 77.9), roots after flowering (RPKM 33.3) and 6 other tissues See more
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    Genomic context

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    See LOC4339756 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29386413..29391930)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29200182..29205687)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277509 Neighboring gene uncharacterized LOC107280884 Neighboring gene transcription factor FAMA Neighboring gene uncharacterized LOC4339757

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid-amino acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    jasmonoyl--L-amino acid synthetase GH3.5
    Names
    Auxin-responsive GH3-like protein 5
    Indole-3-acetic acid-amido synthetase GH3.5
    Jasmonate-amino acid synthetase JAR1
    Jasmonoyl--L-amino acid synthetase GH3.5
    LOC_Os05g50890
    OSJNBa0009C07.16
    Protein JASMONATE RESISTANT 1
    jasmonic acid-amido synthetase JAR1
    NP_001407855.1
    NP_001407856.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420926.1 → NP_001407855.1  jasmonoyl--L-amino acid synthetase GH3.5

      Status: VALIDATED

      Source sequence(s)
      AK071721, CI362300, CI571013, CI626101
      UniProtKB/Swiss-Prot
      A0A0P0WRM7, Q0DFJ9, Q6I581
      UniProtKB/TrEMBL
      A2Y806

    2. NM_001420927.1 → NP_001407856.1  jasmonoyl--L-amino acid synthetase GH3.5

      Status: VALIDATED

      Source sequence(s)
      AK071721, CI362300, CI582225, CI626101
      UniProtKB/Swiss-Prot
      A0A0P0WRM7, Q0DFJ9, Q6I581
      UniProtKB/TrEMBL
      A2Y806

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      29386413..29391930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6I581.1 GenPept UniProtKB/Swiss-Prot:Q6I581

    Gene LinkOut

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