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    LOC4346484 E3 ubiquitin-protein ligase RDUF2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346484, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346484
    Gene description
    E3 ubiquitin-protein ligase RDUF2
    Locus tag
    OSNPB_090243200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346484 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (7582588..7583303)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (3236191..3237018)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 20.2, cofactor of APC complex Neighboring gene uncharacterized LOC4346483 Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene E3 ubiquitin-protein ligase listerin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RDUF2
    Names
    OSJNBa0011D16.18
    OSJNBa0038I09.30
    Os09g0243200
    putative RING finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      7582588..7583303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755922.3 → XP_015611408.1  E3 ubiquitin-protein ligase RDUF2

      UniProtKB/TrEMBL
      A2YYT7, Q0J399, Q6K2C1
      Conserved Domains (1) summary
      cd16454
      Location:70 → 112
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

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