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    LOC4344443 PHD finger protein EHD3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344443, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4344443
    Gene description
    PHD finger protein EHD3-like
    Locus tag
    OSNPB_080105000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Ehd3; OJ1300_E01.8-1
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    Genomic context

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    See LOC4344443 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (277744..281868, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (273244..276973, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344441 Neighboring gene UDP-galactose transporter 1 Neighboring gene F-box protein At5g39450 Neighboring gene indole-2-monooxygenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering. Matsubara K, et al. Plant J, 2011 May. PMID 21284756
    2. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    General protein information

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    Preferred Names
    PHD finger protein EHD3
    Names
    LOC_Os08g01420
    Os08g0105000
    PHD transcription factor
    early heading 3
    pHD finger protein EHD3
    proetin EARLY HEADING 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403316.1 → NP_001390245.1  PHD finger protein EHD3

      Status: VALIDATED

      Source sequence(s)
      AB517626, AK069782, CI589515, CI616917
      UniProtKB/Swiss-Prot
      Q6ZJM9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      277744..281868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZJM9.1 GenPept UniProtKB/Swiss-Prot:Q6ZJM9

    Gene LinkOut

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