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    LOC4333308 small ribosomal subunit protein uS3y [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333308, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333308
    Gene description
    small ribosomal subunit protein uS3y
    Locus tag
    OSNPB_030577000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 232.4), roots before flowering (RPKM 157.4) and 6 other tissues See more
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    Genomic context

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    See LOC4333308 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (21955426..21957860, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (21097553..21100030, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL13y Neighboring gene probable polyamine transporter At1g31830 Neighboring gene small nucleolar RNA snoR143 Neighboring gene small nucleolar RNA snoR143 Neighboring gene kinetochore protein NUF2 homolog Neighboring gene MOB kinase activator-like 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein uS3y
    Names
    40S ribosomal protein S3-2
    Os03g0577000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      21955426..21957860 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776863.3 → XP_015632349.1  small ribosomal subunit protein uS3y

      UniProtKB/TrEMBL
      A2XIT7, A3AJT6, Q10HT1, Q75G91
      Conserved Domains (1) summary
      PTZ00084
      Location:3 → 218
      PTZ00084; 40S ribosomal protein S3; Provisional
    Nucleotide Protein
    Heading Accession and Version

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