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    LOC4341882 auxin response factor 18-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341882, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4341882
    Gene description
    auxin response factor 18-like
    Locus tag
    OSNPB_060685700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ARF10; ARF18; OsARF10; P0623A10.1
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    Genomic context

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    See LOC4341882 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29453005..29456904)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28586433..28590217)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin-3 Neighboring gene uncharacterized LOC112939392 Neighboring gene non-specific lipid transfer protein GPI-anchored 7 Neighboring gene mitochondrial intermediate peptidase, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 18
    Names
    LOC_Os06g47150
    P0009H10.43
    putative auxin response factor 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421739.1 → NP_001408668.1  auxin response factor 18

      Status: VALIDATED

      Source sequence(s)
      AK100322, AU164243, C99610, CI228654, CI269699, CI654377
      UniProtKB/Swiss-Prot
      A0A0P0X0E7, B7EQA3, Q653H7, Q8S976

    2. NM_001421740.1 → NP_001408669.1  auxin response factor 18

      Status: VALIDATED

      Source sequence(s)
      AK100322, AU164243, CI228654, CI269699, CI616809
      UniProtKB/Swiss-Prot
      A0A0P0X0E7, B7EQA3, Q653H7, Q8S976

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29453005..29456904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q653H7.1 GenPept UniProtKB/Swiss-Prot:Q653H7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials