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    LOC4329355 MACPF domain-containing protein At4g24290 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329355, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4329355
    Gene description
    MACPF domain-containing protein At4g24290
    Locus tag
    OSNPB_020475300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4329355 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (16718650..16723586)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (16259517..16264324)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene importin beta-like SAD2 Neighboring gene uncharacterized LOC136355470 Neighboring gene probable sodium/metabolite cotransporter BASS3, chloroplastic Neighboring gene disease resistance protein PIK6-NP

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in plant-type hypersensitive response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of salicylic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MACPF domain-containing protein At4g24290
    Names
    Os02g0475300
    P0419C03.10-1
    P0419C03.10-2
    P0419C03.10-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416607.1 → NP_001403536.1  MACPF domain-containing protein At4g24290

      Status: VALIDATED

      Source sequence(s)
      AK072737, AK105639, AK120516
      UniProtKB/TrEMBL
      Q0E182, Q6K741

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      16718650..16723586
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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