wsl6 white stripe leaf6 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: wsl6
Gene description: white stripe leaf6
Locus tag: OSNPB_050567300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsJ_19577; OJ1781_H11.13
Expression: Broad expression in leaves before flowering (RPKM 18.2), flower buds (RPKM 10.9) and 5 other tissues See more
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Genomic context

Location:: chromosome: 5

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	5	NC_089039.1 (28427142..28429842, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (28242070..28244903, complement)

Chromosome 5 - NC_089039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables rRNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ribosomal small subunit binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in ribosomal small subunit assembly	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: gTPase ERA-like, chloroplastic

Names: GTP-binding protein Era-like; GTPase ERA-like, chloroplastic; GTPase Era; LOC_Os05g49220

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001428248.1 → NP_001415177.1 gTPase ERA-like, chloroplastic

Status: VALIDATED

Source sequence(s)

AK112068

UniProtKB/Swiss-Prot

B9FI63, C7J2L9, Q688W4

UniProtKB/TrEMBL

A2Y7K1