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    LOC4340664 probable peroxygenase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340664, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340664
    Gene description
    probable peroxygenase 5
    Locus tag
    OSNPB_060254600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340664 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (8165768..8173922, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (7996911..8004910, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable peroxygenase 4 Neighboring gene uncharacterized LOC107281251 Neighboring gene probable peroxygenase 4 Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable peroxygenase 5
    Names
    Os06g0254600
    P0046H10.40
    P0592E11.10
    putative calcium binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      8165768..8173922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788575.2 → XP_015644061.1  probable peroxygenase 5 isoform X1

      UniProtKB/TrEMBL
      Q652U5, Q656N6
      Conserved Domains (1) summary
      pfam05042
      Location:36 → 205
      Caleosin; Caleosin related protein

    2. XM_026026032.2 → XP_025881817.1  probable peroxygenase 5 isoform X2

      Conserved Domains (1) summary
      pfam05042
      Location:37 → 204
      Caleosin; Caleosin related protein
    Nucleotide Protein
    Heading Accession and Version

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