LOC4346226 plant UBX domain-containing protein 8 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4346226
Gene description: plant UBX domain-containing protein 8
Locus tag: OSNPB_080546400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OJ1323_A06.23
Expression: Broad expression in mature seeds (RPKM 22.1), flowers (RPKM 12.6) and 5 other tissues See more
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Genomic context

Location:: chromosome: 8

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	8	NC_089042.1 (27512204..27517976, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	8	NC_029263.1 (27365105..27370848, complement)

Chromosome 8 - NC_089042.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ubiquitin binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: plant UBX domain-containing protein 8

Names: Os08g0546400

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001404893.1 → NP_001391822.1 plant UBX domain-containing protein 8

Status: VALIDATED

Source sequence(s)

AK070009, C98423, CA998460, CI274761, CI664318

UniProtKB/TrEMBL

A0A0P0XIZ1, B8B9C8, B9FYF1, Q6ZFV9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089042.1 Reference ASM3414082v1 Primary Assembly

Range

27512204..27517976 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026019878.2 → XP_025875663.1 plant UBX domain-containing protein 8 isoform X1

UniProtKB/TrEMBL

B8B9C8

Conserved Domains (2) summary

cd14351
Location:6 → 42

UBA_Ubx1_like; UBA-like domain found in yeast UBX domain-containing protein 1 (Ubx1) and similar proteins

pfam00789
Location:497 → 577

UBX; UBX domain