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    LOC4344611 zinc finger CCCH domain-containing protein 55-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344611, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4344611
    Gene description
    zinc finger CCCH domain-containing protein 55-like
    Locus tag
    OSNPB_080135800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsC3H55; OJ1613_G04.4-1
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    Genomic context

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    See LOC4344611 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2031458..2038920)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2019179..2026510)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene major pollen allergen Ole e 10 Neighboring gene mediator of RNA polymerase II transcription subunit 21 Neighboring gene uncharacterized LOC136351288 Neighboring gene tryptophan synthase beta chain 1 Neighboring gene homeobox-leucine zipper protein ROC7-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 55
    Names
    LOC_Os08g04170
    P0680F05.43-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422902.1 → NP_001409831.1  zinc finger CCCH domain-containing protein 55

      Status: VALIDATED

      Source sequence(s)
      AK100455, AK111729, CB676301, CF291916, CI623435
      UniProtKB/Swiss-Prot
      A0A0P0XC26, Q6YYC0
      UniProtKB/TrEMBL
      A3BPF0

    RNA

    1. NR_186617.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK103238

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      2031458..2038920
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YYC0.1 GenPept UniProtKB/Swiss-Prot:Q6YYC0

    Gene LinkOut

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