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    LOC4337150 DNA polymerase I A, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337150, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4337150
    Gene description
    DNA polymerase I A, chloroplastic-like
    Locus tag
    OSNPB_040637400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337150 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32924478..32931614)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (32416780..32423961)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein EPIDERMAL PATTERNING FACTOR 2 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transcription termination factor MTERF15, mitochondrial Neighboring gene anthocyanidin 3-O-glucoside 6''-O-acyltransferase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5' exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA polymerase I A, chloroplastic-like
    Names
    Os04g0637400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      32924478..32931614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781280.3 → XP_015636766.1  DNA polymerase I A, chloroplastic-like isoform X1

      UniProtKB/TrEMBL
      B8AV65
      Conserved Domains (3) summary
      cd08640
      Location:630 → 1030
      DNA_pol_A_plastid_like; DNA polymerase A type from plastids of higher plants possibly involve in DNA replication or in the repair of errors occurring during replication
      cd06139
      Location:278 → 514
      DNA_polA_I_Ecoli_like_exo; DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases
      COG0749
      Location:321 → 1032
      PolA; DNA polymerase I - 3'-5' exonuclease and polymerase domains [Replication, recombination and repair]

    2. XM_066309658.1 → XP_066165755.1  DNA polymerase I A, chloroplastic-like isoform X2

      UniProtKB/TrEMBL
      B9FCR5
    Nucleotide Protein
    Heading Accession and Version

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