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    LOC4347862 potassium transporter 18-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347862, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4347862
    Gene description
    potassium transporter 18-like
    Locus tag
    OSNPB_090563200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HAK18; OsHAK18; OsJ_30348
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    Genomic context

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    See LOC4347862 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26812152..26818257, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22367828..22373615, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene senescence-specific cysteine protease SAG12 Neighboring gene uncharacterized LOC112936417 Neighboring gene probable protein S-acyltransferase 19 Neighboring gene ruBisCO large subunit-binding protein subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium transporter 18
    Names
    LOC_Os09g38960
    P0635G10.34
    putative potassium transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422945.1 → NP_001409874.1  potassium transporter 18 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK065464, CI247698
      UniProtKB/Swiss-Prot
      A0A0P0XQE8, Q653B6

    2. NM_001422946.1 → NP_001409875.1  potassium transporter 18 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK065464, CF303591, CI247698

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26812152..26818257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755787.3 → XP_015611273.1  potassium transporter 18 isoform X1

      Conserved Domains (1) summary
      cl15781
      Location:1 → 564
      K_trans; K+ potassium transporter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q653B6.1 GenPept UniProtKB/Swiss-Prot:Q653B6

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